Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4982

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,999,011	-		GFF4981	0.70	-0.7
1,999,071	-		GFF4981	0.74	-0.4
1,999,211	+		GFF4981	0.82	+1.0
1,999,212	-		GFF4981	0.82	+0.2
1,999,212	-		GFF4981	0.82	+0.5
1,999,212	-		GFF4981	0.82	+0.2
1,999,389	-				-1.1
1,999,431	-				+0.2
1,999,475	+				-0.4
1,999,518	+				-0.8
1,999,609	-				-0.1
1,999,632	+				-0.0
1,999,638	+				-0.7
1,999,933	+		GFF4982	0.15	-1.2
1,999,933	+		GFF4982	0.15	-0.4
2,000,113	+		GFF4982	0.34	-0.4
2,000,114	-		GFF4982	0.34	-0.6
2,000,114	-		GFF4982	0.34	-0.9
2,000,194	+		GFF4982	0.42	+0.1
2,000,194	+		GFF4982	0.42	-0.4
2,000,194	+		GFF4982	0.42	+0.9
2,000,195	-		GFF4982	0.43	-0.8
2,000,195	-		GFF4982	0.43	+0.4
2,000,338	+		GFF4982	0.57	-1.2
2,000,763	+				-0.4
2,001,096	+				+1.2
2,001,230	+		GFF4984	0.16	-0.7
2,001,230	+		GFF4984	0.16	-0.4
2,001,231	-		GFF4984	0.16	-0.5
2,001,233	-		GFF4984	0.17	-0.5
2,001,311	+		GFF4984	0.34	+0.7
2,001,312	-		GFF4984	0.34	+0.3
2,001,347	+		GFF4984	0.42	+0.6
2,001,551	+		GFF4984	0.87	+1.0
2,001,552	-		GFF4984	0.88	-1.0