Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4962 and GFF4963 overlap by 47 nucleotides GFF4963 and GFF4964 are separated by 40 nucleotides GFF4964 and GFF4965 are separated by 3 nucleotides GFF4965 and GFF4966 overlap by 4 nucleotides
GFF4962 - Excinuclease ABC subunit B, at 1,979,039 to 1,981,159
GFF4962
GFF4963 - hypothetical protein, at 1,981,113 to 1,981,487
GFF4963
GFF4964 - 3'-5' exonuclease domain protein, at 1,981,528 to 1,982,130
GFF4964
GFF4965 - Putative cytoplasmic protein, at 1,982,134 to 1,982,346
GFF4965
GFF4966 - putative hydrolase, at 1,982,343 to 1,983,170
GFF4966
Position (kb) 1981
1982
1983 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1980.768 kb on + strand, within GFF4962 at 1980.783 kb on + strand, within GFF4962 at 1980.792 kb on + strand, within GFF4962 at 1980.792 kb on + strand, within GFF4962 at 1980.796 kb on - strand, within GFF4962 at 1980.850 kb on - strand, within GFF4962 at 1981.039 kb on - strand at 1981.247 kb on - strand, within GFF4963 at 1981.247 kb on - strand, within GFF4963 at 1981.247 kb on - strand, within GFF4963 at 1981.405 kb on + strand, within GFF4963 at 1981.406 kb on - strand, within GFF4963 at 1981.406 kb on - strand, within GFF4963 at 1981.406 kb on - strand, within GFF4963 at 1981.406 kb on - strand, within GFF4963 at 1981.515 kb on - strand at 1981.839 kb on + strand, within GFF4964 at 1982.071 kb on + strand at 1982.255 kb on + strand, within GFF4965 at 1982.255 kb on + strand, within GFF4965 at 1982.255 kb on + strand, within GFF4965 at 1982.255 kb on + strand, within GFF4965 at 1982.256 kb on - strand, within GFF4965 at 1982.256 kb on - strand, within GFF4965 at 1982.256 kb on - strand, within GFF4965 at 1982.291 kb on + strand, within GFF4965 at 1982.291 kb on + strand, within GFF4965 at 1982.292 kb on - strand, within GFF4965 at 1982.292 kb on - strand, within GFF4965 at 1982.292 kb on - strand, within GFF4965 at 1982.518 kb on + strand, within GFF4966 at 1982.518 kb on + strand, within GFF4966 at 1982.518 kb on + strand, within GFF4966 at 1982.519 kb on - strand, within GFF4966 at 1982.519 kb on - strand, within GFF4966 at 1982.519 kb on - strand, within GFF4966 at 1982.525 kb on - strand, within GFF4966 at 1982.525 kb on - strand, within GFF4966 at 1982.617 kb on + strand, within GFF4966 at 1982.618 kb on - strand, within GFF4966 at 1982.618 kb on - strand, within GFF4966 at 1982.618 kb on - strand, within GFF4966 at 1982.677 kb on + strand, within GFF4966 at 1982.677 kb on + strand, within GFF4966 at 1982.678 kb on - strand, within GFF4966 at 1983.004 kb on + strand, within GFF4966 at 1983.004 kb on + strand, within GFF4966 at 1983.005 kb on - strand, within GFF4966 at 1983.005 kb on - strand, within GFF4966
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 1,980,768 + GFF4962 0.82 +0.2 1,980,783 + GFF4962 0.82 -1.7 1,980,792 + GFF4962 0.83 -1.9 1,980,792 + GFF4962 0.83 +0.2 1,980,796 - GFF4962 0.83 +0.2 1,980,850 - GFF4962 0.85 -0.8 1,981,039 - -1.8 1,981,247 - GFF4963 0.36 -0.4 1,981,247 - GFF4963 0.36 +0.6 1,981,247 - GFF4963 0.36 +0.1 1,981,405 + GFF4963 0.78 +0.4 1,981,406 - GFF4963 0.78 +0.0 1,981,406 - GFF4963 0.78 +0.0 1,981,406 - GFF4963 0.78 -0.6 1,981,406 - GFF4963 0.78 -1.1 1,981,515 - -0.1 1,981,839 + GFF4964 0.52 +0.2 1,982,071 + -0.1 1,982,255 + GFF4965 0.57 -0.0 1,982,255 + GFF4965 0.57 +0.3 1,982,255 + GFF4965 0.57 +0.4 1,982,255 + GFF4965 0.57 +0.5 1,982,256 - GFF4965 0.57 +0.2 1,982,256 - GFF4965 0.57 +1.0 1,982,256 - GFF4965 0.57 +0.9 1,982,291 + GFF4965 0.74 -0.1 1,982,291 + GFF4965 0.74 -0.9 1,982,292 - GFF4965 0.74 -0.3 1,982,292 - GFF4965 0.74 -0.8 1,982,292 - GFF4965 0.74 -0.7 1,982,518 + GFF4966 0.21 -0.1 1,982,518 + GFF4966 0.21 -2.3 1,982,518 + GFF4966 0.21 -0.9 1,982,519 - GFF4966 0.21 -0.2 1,982,519 - GFF4966 0.21 -0.4 1,982,519 - GFF4966 0.21 -1.4 1,982,525 - GFF4966 0.22 +0.1 1,982,525 - GFF4966 0.22 +0.4 1,982,617 + GFF4966 0.33 +2.2 1,982,618 - GFF4966 0.33 -0.4 1,982,618 - GFF4966 0.33 +0.5 1,982,618 - GFF4966 0.33 -0.6 1,982,677 + GFF4966 0.40 -0.3 1,982,677 + GFF4966 0.40 +0.9 1,982,678 - GFF4966 0.40 -0.3 1,983,004 + GFF4966 0.80 +0.8 1,983,004 + GFF4966 0.80 -0.3 1,983,005 - GFF4966 0.80 -1.0 1,983,005 - GFF4966 0.80 +0.1
Or see this region's nucleotide sequence