Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4941

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,959,682	-				-0.3
1,959,852	+		GFF4941	0.16	-1.1
1,959,853	-		GFF4941	0.16	+0.3
1,960,931	-		GFF4941	0.84	-0.4
1,960,932	+		GFF4941	0.84	+0.3
1,960,932	+		GFF4941	0.84	+0.2
1,960,933	-		GFF4941	0.84	-0.3
1,960,933	-		GFF4941	0.84	+1.4
1,960,933	-		GFF4941	0.84	+1.6
1,960,933	-		GFF4941	0.84	+0.6
1,960,936	+		GFF4941	0.84	+0.5
1,960,936	+		GFF4941	0.84	+0.3
1,960,936	+		GFF4941	0.84	-0.0
1,960,937	-		GFF4941	0.84	+1.5
1,960,937	-		GFF4941	0.84	-3.2
1,960,937	-		GFF4941	0.84	-0.7
1,960,937	-		GFF4941	0.84	-0.9
1,960,942	+		GFF4941	0.84	-1.4
1,960,943	-		GFF4941	0.84	+0.5
1,961,119	+				+0.2
1,961,119	+				-0.6
1,961,291	-				+1.8
1,961,525	-		GFF4942	0.33	-0.8
1,961,539	+		GFF4942	0.34	+0.6
1,961,540	-		GFF4942	0.34	+0.1
1,961,540	-		GFF4942	0.34	+0.9
1,961,677	+		GFF4942	0.48	-1.6
1,961,678	-		GFF4942	0.48	-0.2
1,962,064	+		GFF4942	0.87	+0.0
1,962,065	-		GFF4942	0.88	+0.6