Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4896

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,909,080	-				+0.3
1,909,080	-				-0.4
1,909,367	+		GFF4895	0.35	+1.2
1,909,368	-		GFF4895	0.36	-0.4
1,909,484	+		GFF4895	0.50	-1.1
1,909,484	+		GFF4895	0.50	+0.5
1,909,485	-		GFF4895	0.50	+0.2
1,909,485	-		GFF4895	0.50	-0.1
1,909,485	-		GFF4895	0.50	+0.2
1,909,881	+				-0.4
1,909,881	+				+0.1
1,909,882	-				-1.3
1,909,912	+				+0.8
1,909,912	+				+1.0
1,909,913	-				-0.2
1,909,913	-				-0.1
1,910,046	+		GFF4896	0.25	-0.2
1,910,395	+				-0.2
1,910,396	-				-0.6
1,910,426	+				+0.1
1,910,551	+		GFF4897	0.34	+0.4
1,910,551	+		GFF4897	0.34	+0.0
1,910,551	+		GFF4897	0.34	-0.9
1,910,551	+		GFF4897	0.34	-1.3
1,910,551	+		GFF4897	0.34	+0.5
1,910,552	-		GFF4897	0.34	-0.4
1,910,552	-		GFF4897	0.34	-0.5
1,910,552	-		GFF4897	0.34	-0.8
1,910,722	+		GFF4897	0.70	-1.6
1,910,723	-		GFF4897	0.70	-0.7
1,910,723	-		GFF4897	0.70	-0.5
1,910,878	+				-0.2
1,910,878	+				-0.2
1,910,954	+				-0.5
1,910,954	+				-2.1
1,910,954	+				-0.8
1,910,954	+				-0.2
1,910,955	-				-1.3
1,910,955	-				-2.5
1,910,955	-				-0.1
1,910,955	-				-0.0
1,910,955	-				-0.3
1,910,955	-				-0.1
1,910,955	-				-0.7
1,910,967	-				+0.0