Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4879

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,888,623	-				+0.9
1,888,730	-				-0.4
1,888,881	+		GFF4879	0.33	-0.6
1,888,881	+		GFF4879	0.33	-1.1
1,888,882	-		GFF4879	0.33	-0.8
1,888,882	-		GFF4879	0.33	+2.2
1,888,930	-		GFF4879	0.46	-0.6
1,889,149	+				+0.0
1,889,149	+				-0.8
1,889,149	+				+0.1
1,889,150	-				-0.4
1,889,153	+				+0.9
1,889,153	+				+1.2
1,889,153	+				+0.2
1,889,154	-				-0.2
1,889,154	-				+0.1
1,889,155	+				+0.5
1,889,155	+				+0.2
1,889,168	+				-0.1
1,889,168	+				+0.6
1,889,169	-				-1.1
1,889,172	+				+0.4
1,889,172	+				-0.1
1,889,172	+				+1.9
1,889,173	-				-0.4
1,889,173	-				-0.4
1,889,173	-				-0.2
1,889,653	+		GFF4880	0.22	+1.5
1,889,653	+		GFF4880	0.22	+0.6
1,889,653	+		GFF4880	0.22	-0.2
1,889,654	-		GFF4880	0.22	+0.6
1,889,654	-		GFF4880	0.22	+0.1
1,889,654	-		GFF4880	0.22	+0.2
1,889,654	-		GFF4880	0.22	-0.2
1,889,659	+		GFF4880	0.22	-0.9
1,889,659	+		GFF4880	0.22	+0.6
1,889,698	+		GFF4880	0.24	+1.0
1,889,698	+		GFF4880	0.24	+0.2
1,889,698	+		GFF4880	0.24	-0.2
1,889,698	+		GFF4880	0.24	+0.3
1,889,699	-		GFF4880	0.24	-0.5
1,889,699	-		GFF4880	0.24	+1.0
1,889,699	-		GFF4880	0.24	-0.2
1,889,728	+		GFF4880	0.25	-0.0
1,889,729	-		GFF4880	0.26	+1.8
1,889,729	-		GFF4880	0.26	+0.7
1,889,875	+		GFF4880	0.33	-0.1
1,889,875	+		GFF4880	0.33	-0.2
1,889,876	-		GFF4880	0.33	+0.4
1,889,876	-		GFF4880	0.33	+0.8
1,889,876	-		GFF4880	0.33	-0.4
1,889,876	-		GFF4880	0.33	+0.0
1,889,876	-		GFF4880	0.33	-1.3
1,889,876	-		GFF4880	0.33	-1.1
1,889,876	-		GFF4880	0.33	-2.1
1,889,876	-		GFF4880	0.33	+0.7
1,889,968	+		GFF4880	0.38	-0.5
1,889,968	+		GFF4880	0.38	-1.7
1,889,968	+		GFF4880	0.38	+0.2
1,889,969	-		GFF4880	0.38	+0.6
1,889,969	-		GFF4880	0.38	-0.4
1,889,969	-		GFF4880	0.38	+0.5
1,889,969	-		GFF4880	0.38	-2.2
1,889,969	-		GFF4880	0.38	+0.9
1,889,969	-		GFF4880	0.38	-0.8
1,889,969	-		GFF4880	0.38	-1.2
1,890,073	+		GFF4880	0.43	-0.5
1,890,073	+		GFF4880	0.43	+0.1
1,890,073	+		GFF4880	0.43	+0.6
1,890,074	-		GFF4880	0.43	-0.5
1,890,074	-		GFF4880	0.43	-0.3
1,890,074	-		GFF4880	0.43	-0.2
1,890,074	-		GFF4880	0.43	-0.1
1,890,074	-		GFF4880	0.43	-0.8
1,890,085	+		GFF4880	0.44	-0.5
1,890,086	-		GFF4880	0.44	+0.1