Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4835

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,844,807	+		GFF4833	0.40	+0.2
1,844,807	+		GFF4833	0.40	+0.3
1,844,808	-		GFF4833	0.40	-1.3
1,844,808	-		GFF4833	0.40	-0.7
1,845,294	+		GFF4834	0.18	-0.6
1,845,522	+		GFF4834	0.56	+0.9
1,845,522	+		GFF4834	0.56	-0.5
1,845,523	-		GFF4834	0.57	+1.2
1,845,782	+				-0.5
1,845,782	+				+0.3
1,845,782	+				+0.4
1,845,783	-				+0.1
1,845,783	-				-1.3
1,845,783	-				+0.6
1,845,984	-		GFF4835	0.57	+0.6
1,846,028	+		GFF4835	0.69	+0.5
1,846,260	-				+0.3
1,846,260	-				-1.1
1,846,274	+				+1.0
1,846,274	+				-0.0
1,846,274	+				+0.0
1,846,274	+				-0.1
1,846,274	+				-0.4
1,846,275	-				-0.6
1,846,275	-				+0.5
1,846,275	-				-0.6
1,846,275	-				+0.6
1,846,275	-				+1.4
1,846,275	-				-0.5
1,846,283	+				+0.7
1,846,283	+				-0.7
1,846,284	-				-0.8
1,846,284	-				+0.0
1,846,284	-				+0.2
1,846,284	-				+1.1
1,846,284	-				+0.5
1,846,316	+		GFF4836	0.20	-0.3
1,846,317	-		GFF4836	0.20	+0.8
1,846,317	-		GFF4836	0.20	+0.3
1,846,421	+		GFF4836	0.56	+0.1
1,846,451	+		GFF4836	0.66	-0.7
1,846,451	+		GFF4836	0.66	-0.1
1,846,452	-		GFF4836	0.67	-1.6
1,846,452	-		GFF4836	0.67	+1.3
1,846,452	-		GFF4836	0.67	-0.2
1,846,452	-		GFF4836	0.67	+0.6
1,846,452	-		GFF4836	0.67	-1.2
1,846,452	-		GFF4836	0.67	-0.4
1,846,466	+		GFF4836	0.71	-0.1
1,846,466	+		GFF4836	0.71	+0.7
1,846,466	+		GFF4836	0.71	+1.0
1,846,466	+		GFF4836	0.71	-0.1
1,846,467	-		GFF4836	0.72	-0.3
1,846,467	-		GFF4836	0.72	+0.6
1,846,467	-		GFF4836	0.72	-0.8
1,846,469	+		GFF4836	0.73	-1.8
1,846,470	-		GFF4836	0.73	+0.8
1,846,470	-		GFF4836	0.73	+0.2
1,846,470	-		GFF4836	0.73	+0.7
1,846,470	-		GFF4836	0.73	-0.2
1,846,472	+		GFF4836	0.74	-2.7
1,846,472	+		GFF4836	0.74	+0.3
1,846,621	-				-0.6
1,846,621	-				-1.0
1,846,621	-				-0.4
1,846,883	-		GFF4837	0.20	+0.2