Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4789

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,800,220	-		GFF4788	0.59	-0.4
1,800,220	-		GFF4788	0.59	-1.8
1,800,306	+		GFF4788	0.63	-1.1
1,800,306	+		GFF4788	0.63	-0.6
1,800,306	+		GFF4788	0.63	-1.4
1,800,306	+		GFF4788	0.63	-0.5
1,800,306	+		GFF4788	0.63	+0.2
1,800,423	+		GFF4788	0.68	-2.2
1,800,423	+		GFF4788	0.68	-1.4
1,800,424	-		GFF4788	0.68	-3.0
1,800,424	-		GFF4788	0.68	+0.2
1,800,424	-		GFF4788	0.68	-1.2
1,800,474	+		GFF4788	0.71	-0.8
1,800,474	+		GFF4788	0.71	-0.4
1,800,474	+		GFF4788	0.71	-1.1
1,800,474	+		GFF4788	0.71	-1.1
1,800,474	+		GFF4788	0.71	-0.3
1,800,474	+		GFF4788	0.71	-1.1
1,800,474	+		GFF4788	0.71	+0.2
1,800,474	+		GFF4788	0.71	-0.4
1,800,474	+		GFF4788	0.71	+0.2
1,800,474	+		GFF4788	0.71	-1.3
1,800,474	+		GFF4788	0.71	-2.1
1,800,475	-		GFF4788	0.71	+0.4
1,800,475	-		GFF4788	0.71	-0.8
1,800,475	-		GFF4788	0.71	-1.0
1,800,475	-		GFF4788	0.71	-0.7
1,800,475	-		GFF4788	0.71	-0.0
1,800,475	-		GFF4788	0.71	-1.6
1,800,475	-		GFF4788	0.71	-1.6
1,800,475	-		GFF4788	0.71	-0.5
1,800,571	-		GFF4788	0.75	-0.4
1,800,729	+		GFF4788	0.82	-2.3
1,800,730	-		GFF4788	0.82	-0.0
1,800,798	+		GFF4788	0.85	-1.5
1,800,867	+		GFF4788	0.89	-0.6
1,800,867	+		GFF4788	0.89	+1.2
1,800,868	-		GFF4788	0.89	-0.0
1,800,868	-		GFF4788	0.89	-1.0
1,800,868	-		GFF4788	0.89	-1.1
1,800,954	+				-0.7
1,800,954	+				-1.7
1,800,955	-				-1.7
1,800,955	-				-1.6
1,801,144	-				-0.1
1,801,166	+				-1.8
1,801,166	+				+0.2
1,801,174	+				+0.6
1,801,175	-				-1.4
1,801,175	-				-2.0
1,801,348	+		GFF4789	0.26	-1.1
1,801,348	+		GFF4789	0.26	-0.9
1,801,436	-		GFF4789	0.39	-2.2
1,801,436	-		GFF4789	0.39	-1.0
1,801,436	-		GFF4789	0.39	+0.6
1,801,879	+				+0.1
1,801,977	-				+0.1
1,802,316	-		GFF4790	0.45	-0.8
1,802,654	+		GFF4790	0.83	-0.4
1,802,654	+		GFF4790	0.83	+1.6
1,802,654	+		GFF4790	0.83	+0.2
1,802,654	+		GFF4790	0.83	-2.1
1,802,655	-		GFF4790	0.84	+0.0
1,802,742	-				-0.1
1,802,742	-				+0.7
1,802,742	-				+0.2