Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4768

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,776,502	+		GFF4767	0.51	+0.8
1,776,847	+		GFF4767	0.69	+1.9
1,776,848	-		GFF4767	0.69	+0.6
1,776,886	+		GFF4767	0.71	+0.8
1,776,992	-		GFF4767	0.77	+0.4
1,777,160	-		GFF4767	0.85	+0.4
1,777,160	-		GFF4767	0.85	+0.5
1,777,201	+		GFF4767	0.88	+0.9
1,777,201	+		GFF4767	0.88	+0.4
1,777,202	-		GFF4767	0.88	+1.2
1,777,877	+		GFF4768	0.36	+0.5
1,777,878	-		GFF4768	0.36	-0.2
1,777,878	-		GFF4768	0.36	+1.4
1,777,878	-		GFF4768	0.36	+0.9
1,777,878	-		GFF4768	0.36	+0.7
1,778,237	+		GFF4768	0.65	-0.2
1,778,237	+		GFF4768	0.65	-0.8
1,778,312	+		GFF4768	0.71	+0.4
1,778,312	+		GFF4768	0.71	-0.0
1,778,405	+		GFF4768	0.78	+0.9
1,778,408	+		GFF4768	0.78	-0.3
1,778,409	-		GFF4768	0.79	+1.3
1,778,409	-		GFF4768	0.79	+0.3
1,778,603	+				+0.8
1,778,603	+				-0.5
1,778,604	-				+0.7
1,778,657	+				-0.2
1,778,657	+				-2.3
1,778,658	-				-0.6
1,778,658	-				+0.4
1,778,658	-				+1.0
1,778,781	+				-1.3
1,778,782	-				-1.6
1,778,826	+		GFF4769	0.12	-1.4
1,778,841	+		GFF4769	0.14	-3.8
1,778,842	-		GFF4769	0.14	-1.6
1,778,842	-		GFF4769	0.14	+0.2
1,778,842	-		GFF4769	0.14	-2.9
1,778,842	-		GFF4769	0.14	-2.0
1,778,842	-		GFF4769	0.14	+0.6
1,778,886	+		GFF4769	0.18	-2.7
1,778,887	-		GFF4769	0.18	-1.2
1,778,887	-		GFF4769	0.18	-2.0
1,778,967	+		GFF4769	0.26	-1.2
1,778,967	+		GFF4769	0.26	-1.1
1,778,968	-		GFF4769	0.26	-1.1
1,779,021	+		GFF4769	0.31	-0.8
1,779,021	+		GFF4769	0.31	-1.7
1,779,022	-		GFF4769	0.31	-0.4
1,779,045	+		GFF4769	0.33	-1.4
1,779,046	-		GFF4769	0.33	+0.1
1,779,190	-		GFF4769	0.47	-0.9
1,779,190	-		GFF4769	0.47	-0.8
1,779,337	-		GFF4769	0.61	-2.5
1,779,481	-		GFF4769	0.75	-0.6
1,779,481	-		GFF4769	0.75	-1.1
1,779,588	+		GFF4769	0.85	-0.4
1,779,588	+		GFF4769	0.85	-1.2
1,779,588	+		GFF4769	0.85	-2.0
1,779,589	-		GFF4769	0.85	-1.3
1,779,589	-		GFF4769	0.85	-1.7
1,779,589	-		GFF4769	0.85	-0.7