Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF469 and GFF470 are separated by 42 nucleotides GFF470 and GFF471 overlap by 1 nucleotides GFF471 and GFF472 are separated by 1 nucleotides GFF472 and GFF473 overlap by 4 nucleotides
GFF469 - Nucleoside ABC transporter, periplasmic nucleoside-binding protein, at 133,679 to 134,785
GFF469
GFF470 - FIG00441296: hypothetical protein, at 134,828 to 135,202
GFF470
GFF471 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 135,202 to 136,596
GFF471
GFF472 - hypothetical protein, at 136,598 to 136,804
GFF472
GFF473 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 136,801 to 137,625
GFF473
Position (kb) 135
136
137 Strain fitness (log2 ratio) -1
0
1 at 134.347 kb on - strand, within GFF469 at 134.347 kb on - strand, within GFF469 at 134.481 kb on + strand, within GFF469 at 134.649 kb on + strand, within GFF469 at 134.649 kb on + strand, within GFF469 at 134.670 kb on + strand, within GFF469 at 134.670 kb on + strand, within GFF469 at 134.671 kb on - strand, within GFF469 at 134.964 kb on + strand, within GFF470 at 134.964 kb on + strand, within GFF470 at 135.052 kb on - strand, within GFF470 at 135.147 kb on + strand, within GFF470 at 135.148 kb on - strand, within GFF470 at 135.557 kb on + strand, within GFF471 at 135.558 kb on - strand, within GFF471 at 136.217 kb on + strand, within GFF471 at 136.632 kb on + strand, within GFF472 at 136.632 kb on + strand, within GFF472 at 136.779 kb on + strand, within GFF472 at 136.967 kb on + strand, within GFF473 at 137.319 kb on - strand, within GFF473 at 137.319 kb on - strand, within GFF473 at 137.319 kb on - strand, within GFF473 at 137.334 kb on - strand, within GFF473 at 137.520 kb on - strand, within GFF473
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 134,347 - GFF469 0.60 -1.1 134,347 - GFF469 0.60 -0.8 134,481 + GFF469 0.72 +0.6 134,649 + GFF469 0.88 -0.1 134,649 + GFF469 0.88 -0.1 134,670 + GFF469 0.90 +0.5 134,670 + GFF469 0.90 +0.0 134,671 - GFF469 0.90 +0.0 134,964 + GFF470 0.36 +0.0 134,964 + GFF470 0.36 +0.4 135,052 - GFF470 0.60 +0.7 135,147 + GFF470 0.85 -0.2 135,148 - GFF470 0.85 -0.3 135,557 + GFF471 0.25 +0.9 135,558 - GFF471 0.26 +0.2 136,217 + GFF471 0.73 +0.7 136,632 + GFF472 0.16 -1.1 136,632 + GFF472 0.16 -0.4 136,779 + GFF472 0.87 +0.3 136,967 + GFF473 0.20 +0.3 137,319 - GFF473 0.63 -0.3 137,319 - GFF473 0.63 -0.1 137,319 - GFF473 0.63 +0.2 137,334 - GFF473 0.65 -0.3 137,520 - GFF473 0.87 +0.0
Or see this region's nucleotide sequence