Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4399

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,325,851	-		GFF4398	0.38	-0.3
1,325,896	-		GFF4398	0.43	+0.2
1,326,069	+		GFF4398	0.63	+0.2
1,326,151	+		GFF4398	0.72	-0.0
1,326,153	+		GFF4398	0.73	+0.3
1,326,154	-		GFF4398	0.73	+1.2
1,326,247	-		GFF4398	0.84	-1.4
1,326,249	+		GFF4398	0.84	+0.1
1,326,249	+		GFF4398	0.84	+0.6
1,326,250	-		GFF4398	0.84	+1.5
1,326,321	+				+0.2
1,326,322	-				+0.4
1,326,417	+				-1.2
1,326,433	+				-0.4
1,326,442	-				-0.7
1,326,464	+				-0.2
1,326,520	+				-0.6
1,326,526	-				-0.4
1,326,550	+				+0.2
1,326,592	-				-0.8
1,326,656	+				+0.9
1,327,080	+		GFF4399	0.69	+1.0
1,327,637	-		GFF4400	0.15	-1.4
1,327,637	-		GFF4400	0.15	+0.1
1,327,806	-		GFF4400	0.46	-0.1
1,328,000	+		GFF4400	0.81	-0.4
1,328,051	+				-0.0
1,328,051	+				+0.6
1,328,052	-				-1.0
1,328,052	-				-0.3
1,328,052	-				-1.7
1,328,052	-				-0.1