Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4102

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,011,607	+		GFF4101	0.53	-0.2
1,011,607	+		GFF4101	0.53	-2.0
1,011,607	+		GFF4101	0.53	+1.6
1,012,136	-				+0.2
1,012,136	-				+0.2
1,012,277	+				+0.5
1,012,409	+				-0.5
1,012,409	+				+1.2
1,012,410	-				-0.1
1,012,410	-				+1.9
1,012,410	-				-0.1
1,012,410	-				-0.1
1,012,469	+		GFF4102	0.15	+0.4
1,012,469	+		GFF4102	0.15	+0.4
1,012,469	+		GFF4102	0.15	-0.2
1,012,470	-		GFF4102	0.15	+1.6
1,012,470	-		GFF4102	0.15	-1.3
1,012,470	-		GFF4102	0.15	-0.9
1,012,470	-		GFF4102	0.15	-0.4
1,012,473	-		GFF4102	0.15	-1.5
1,012,473	-		GFF4102	0.15	-0.1
1,012,473	-		GFF4102	0.15	-1.1
1,012,529	+		GFF4102	0.20	+0.4
1,012,529	+		GFF4102	0.20	-1.0
1,012,529	+		GFF4102	0.20	+0.4
1,012,530	-		GFF4102	0.20	+0.2
1,012,530	-		GFF4102	0.20	-0.0
1,012,530	-		GFF4102	0.20	-1.7
1,012,530	-		GFF4102	0.20	-0.1
1,012,530	-		GFF4102	0.20	+0.6
1,012,920	-		GFF4102	0.51	+0.2
1,013,327	+		GFF4102	0.84	+0.0
1,013,327	+		GFF4102	0.84	+0.9
1,013,327	+		GFF4102	0.84	+0.3
1,013,526	+				+0.4
1,013,772	+		GFF4103	0.24	-1.2
1,013,772	+		GFF4103	0.24	+0.2
1,013,773	-		GFF4103	0.24	-0.1
1,013,773	-		GFF4103	0.24	+1.5
1,013,890	-		GFF4103	0.36	-0.1
1,013,904	+		GFF4103	0.37	+0.2
1,013,904	+		GFF4103	0.37	-0.1
1,013,905	-		GFF4103	0.37	-0.9
1,013,905	-		GFF4103	0.37	-0.3
1,013,905	-		GFF4103	0.37	+1.0
1,013,907	+		GFF4103	0.37	+0.2
1,013,907	+		GFF4103	0.37	+0.3
1,013,907	+		GFF4103	0.37	-0.3
1,013,907	+		GFF4103	0.37	-4.5
1,013,907	+		GFF4103	0.37	+0.3
1,013,907	+		GFF4103	0.37	+0.2
1,013,907	+		GFF4103	0.37	-0.0
1,013,907	+		GFF4103	0.37	+0.2
1,013,907	+		GFF4103	0.37	+0.2
1,013,907	+		GFF4103	0.37	-0.8
1,013,908	-		GFF4103	0.37	+0.2
1,013,908	-		GFF4103	0.37	+0.5
1,013,908	-		GFF4103	0.37	-2.3
1,013,908	-		GFF4103	0.37	-0.0
1,013,908	-		GFF4103	0.37	-0.2
1,013,908	-		GFF4103	0.37	-0.7
1,013,908	-		GFF4103	0.37	-0.1
1,013,908	-		GFF4103	0.37	-1.6
1,013,964	+		GFF4103	0.43	+0.4
1,013,964	+		GFF4103	0.43	-1.8
1,013,964	+		GFF4103	0.43	+1.2
1,013,965	-		GFF4103	0.43	-0.8
1,014,003	+		GFF4103	0.47	+0.0
1,014,003	+		GFF4103	0.47	-0.2
1,014,003	+		GFF4103	0.47	+1.0
1,014,004	-		GFF4103	0.47	+0.2
1,014,174	+		GFF4103	0.63	-0.0
1,014,174	+		GFF4103	0.63	+0.1
1,014,175	-		GFF4103	0.64	+0.1
1,014,198	+		GFF4103	0.66	+1.9
1,014,199	-		GFF4103	0.66	-0.2
1,014,213	+		GFF4103	0.67	+0.8
1,014,213	+		GFF4103	0.67	-0.1
1,014,214	-		GFF4103	0.67	+0.8
1,014,243	+		GFF4103	0.70	-1.8
1,014,243	+		GFF4103	0.70	+0.3
1,014,243	+		GFF4103	0.70	+0.4
1,014,244	-		GFF4103	0.70	+2.2
1,014,244	-		GFF4103	0.70	+0.2
1,014,244	-		GFF4103	0.70	-0.3
1,014,244	-		GFF4103	0.70	+1.0
1,014,244	-		GFF4103	0.70	+0.6
1,014,354	+		GFF4103	0.81	-0.6