Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4056 and GFF4057 overlap by 4 nucleotides GFF4057 and GFF4058 overlap by 4 nucleotides GFF4058 and GFF4059 overlap by 4 nucleotides GFF4059 and GFF4060 are separated by 89 nucleotides
GFF4056 - Flagellar motor switch protein FliG, at 974,599 to 975,624
GFF4056
GFF4057 - Flagellar assembly protein FliH, at 975,621 to 976,331
GFF4057
GFF4058 - Flagellum-specific ATP synthase FliI, at 976,328 to 977,635
GFF4058
GFF4059 - hypothetical protein, at 977,632 to 978,066
GFF4059
GFF4060 - Flagellar hook-associated protein FliD, at 978,156 to 979,514
GFF4060
Position (kb) 976
977
978 Strain fitness (log2 ratio) -2
-1
0
1 at 975.630 kb on + strand at 975.766 kb on - strand, within GFF4057 at 975.766 kb on - strand, within GFF4057 at 975.879 kb on + strand, within GFF4057 at 975.879 kb on + strand, within GFF4057 at 975.879 kb on + strand, within GFF4057 at 975.880 kb on - strand, within GFF4057 at 977.052 kb on - strand, within GFF4058 at 977.246 kb on + strand, within GFF4058 at 977.246 kb on + strand, within GFF4058 at 977.247 kb on - strand, within GFF4058 at 977.247 kb on - strand, within GFF4058 at 977.462 kb on + strand, within GFF4058 at 977.498 kb on + strand, within GFF4058 at 977.498 kb on + strand, within GFF4058 at 977.499 kb on - strand, within GFF4058 at 977.499 kb on - strand, within GFF4058 at 977.561 kb on + strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.202 kb on - strand at 978.268 kb on - strand at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.414 kb on + strand, within GFF4060 at 978.415 kb on - strand, within GFF4060 at 978.415 kb on - strand, within GFF4060
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 975,630 + +0.4 975,766 - GFF4057 0.20 +0.9 975,766 - GFF4057 0.20 +0.2 975,879 + GFF4057 0.36 +0.3 975,879 + GFF4057 0.36 +0.2 975,879 + GFF4057 0.36 -0.2 975,880 - GFF4057 0.36 +0.6 977,052 - GFF4058 0.55 -0.0 977,246 + GFF4058 0.70 -1.4 977,246 + GFF4058 0.70 -0.2 977,247 - GFF4058 0.70 +0.5 977,247 - GFF4058 0.70 -2.3 977,462 + GFF4058 0.87 -1.2 977,498 + GFF4058 0.89 +0.2 977,498 + GFF4058 0.89 +0.8 977,499 - GFF4058 0.90 +0.3 977,499 - GFF4058 0.90 -0.2 977,561 + -2.7 978,202 - -0.8 978,202 - +0.5 978,202 - -0.1 978,202 - -0.2 978,202 - +0.6 978,202 - +0.1 978,268 - +0.2 978,414 + GFF4060 0.19 +0.4 978,414 + GFF4060 0.19 -0.8 978,414 + GFF4060 0.19 -0.1 978,414 + GFF4060 0.19 -2.1 978,414 + GFF4060 0.19 -0.7 978,414 + GFF4060 0.19 -0.6 978,415 - GFF4060 0.19 -1.0 978,415 - GFF4060 0.19 +0.6
Or see this region's nucleotide sequence