Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3885 and GFF3886 are separated by 231 nucleotides GFF3886 and GFF3887 are separated by 152 nucleotides GFF3887 and GFF3888 overlap by 4 nucleotides GFF3888 and GFF3889 are separated by 11 nucleotides
GFF3885 - Integral membrane protein, interacts with FtsH, at 799,127 to 799,843
GFF3885
GFF3886 - Protein GlcG, at 800,075 to 800,482
GFF3886
GFF3887 - hypothetical protein, at 800,635 to 800,847
GFF3887
GFF3888 - Biopolymer transport protein ExbD/TolR, at 800,844 to 801,257
GFF3888
GFF3889 - MotA/TolQ/ExbB proton channel family protein, at 801,269 to 802,021
GFF3889
Position (kb) 800
801 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 799.734 kb on + strand, within GFF3885 at 799.737 kb on + strand, within GFF3885 at 799.737 kb on + strand, within GFF3885 at 799.737 kb on + strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.738 kb on - strand, within GFF3885 at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.904 kb on + strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.905 kb on - strand at 799.954 kb on + strand at 799.954 kb on + strand at 799.955 kb on - strand at 799.993 kb on + strand at 800.020 kb on + strand at 800.020 kb on + strand at 800.062 kb on + strand at 800.063 kb on - strand at 800.063 kb on - strand at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.297 kb on + strand, within GFF3886 at 800.298 kb on - strand, within GFF3886 at 800.298 kb on - strand, within GFF3886 at 800.480 kb on + strand at 800.481 kb on - strand at 800.520 kb on + strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.637 kb on - strand at 800.681 kb on + strand, within GFF3887 at 800.768 kb on + strand, within GFF3887 at 800.768 kb on + strand, within GFF3887 at 800.769 kb on - strand, within GFF3887 at 801.043 kb on + strand, within GFF3888 at 801.043 kb on + strand, within GFF3888 at 801.044 kb on - strand, within GFF3888 at 801.342 kb on + strand at 801.540 kb on + strand, within GFF3889
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 799,734 + GFF3885 0.85 +0.2 799,737 + GFF3885 0.85 -1.6 799,737 + GFF3885 0.85 +0.3 799,737 + GFF3885 0.85 +0.6 799,738 - GFF3885 0.85 -0.5 799,738 - GFF3885 0.85 -0.3 799,738 - GFF3885 0.85 +0.3 799,738 - GFF3885 0.85 -1.2 799,904 + +0.1 799,904 + +0.9 799,904 + -0.2 799,904 + -0.2 799,904 + -0.6 799,904 + -0.4 799,905 - -0.4 799,905 - -0.1 799,905 - -0.3 799,905 - +0.5 799,905 - -0.5 799,954 + -0.5 799,954 + -0.6 799,955 - +0.6 799,993 + +0.5 800,020 + +0.3 800,020 + -1.3 800,062 + +0.3 800,063 - +0.3 800,063 - +0.7 800,297 + GFF3886 0.54 -0.8 800,297 + GFF3886 0.54 -1.5 800,297 + GFF3886 0.54 -2.2 800,297 + GFF3886 0.54 +1.6 800,298 - GFF3886 0.55 -3.9 800,298 - GFF3886 0.55 -0.0 800,480 + -0.7 800,481 - +0.6 800,520 + -0.8 800,637 - -1.0 800,637 - -0.2 800,637 - -1.1 800,637 - +1.8 800,681 + GFF3887 0.22 -0.3 800,768 + GFF3887 0.62 +0.1 800,768 + GFF3887 0.62 -1.0 800,769 - GFF3887 0.63 +0.2 801,043 + GFF3888 0.48 -2.1 801,043 + GFF3888 0.48 -1.6 801,044 - GFF3888 0.48 -2.5 801,342 + -0.8 801,540 + GFF3889 0.36 -0.8
Or see this region's nucleotide sequence