Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3875 and GFF3876 are separated by 11 nucleotides GFF3876 and GFF3877 are separated by 118 nucleotides GFF3877 and GFF3878 are separated by 28 nucleotides
GFF3875 - Paraquat-inducible protein B, at 788,963 to 790,000
GFF3875
GFF3876 - protein of unknown function DUF330, at 790,012 to 790,608
GFF3876
GFF3877 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 790,727 to 792,559
GFF3877
GFF3878 - Quinone oxidoreductase (EC 1.6.5.5), at 792,588 to 793,574
GFF3878
Position (kb) 790
791
792
793 Strain fitness (log2 ratio) -2
-1
0
1 at 790.687 kb on - strand at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.979 kb on + strand, within GFF3877 at 790.980 kb on - strand, within GFF3877 at 791.204 kb on + strand, within GFF3877 at 791.204 kb on + strand, within GFF3877 at 792.581 kb on + strand at 792.640 kb on + strand at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.706 kb on + strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.707 kb on - strand, within GFF3878 at 792.862 kb on + strand, within GFF3878 at 792.924 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 792.925 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.003 kb on + strand, within GFF3878 at 793.004 kb on - strand, within GFF3878 at 793.204 kb on + strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.205 kb on - strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.423 kb on + strand, within GFF3878 at 793.423 kb on + strand, within GFF3878
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 790,687 - -0.9 790,979 + GFF3877 0.14 -0.3 790,979 + GFF3877 0.14 +0.2 790,979 + GFF3877 0.14 +0.4 790,979 + GFF3877 0.14 +0.0 790,979 + GFF3877 0.14 -0.3 790,979 + GFF3877 0.14 -2.2 790,980 - GFF3877 0.14 -0.9 791,204 + GFF3877 0.26 -0.3 791,204 + GFF3877 0.26 -0.7 792,581 + +0.9 792,640 + +0.0 792,706 + GFF3878 0.12 +0.0 792,706 + GFF3878 0.12 +0.4 792,706 + GFF3878 0.12 -1.0 792,706 + GFF3878 0.12 +1.0 792,707 - GFF3878 0.12 +1.2 792,707 - GFF3878 0.12 +0.4 792,707 - GFF3878 0.12 -0.0 792,707 - GFF3878 0.12 -0.1 792,707 - GFF3878 0.12 +0.2 792,707 - GFF3878 0.12 -0.3 792,707 - GFF3878 0.12 +0.2 792,862 + GFF3878 0.28 -0.9 792,924 + GFF3878 0.34 +0.7 792,925 + GFF3878 0.34 -0.4 792,925 + GFF3878 0.34 +0.2 792,925 + GFF3878 0.34 -1.3 793,003 + GFF3878 0.42 -0.8 793,003 + GFF3878 0.42 +0.6 793,003 + GFF3878 0.42 -1.1 793,003 + GFF3878 0.42 -0.1 793,004 - GFF3878 0.42 -0.5 793,204 + GFF3878 0.62 +0.5 793,205 - GFF3878 0.63 +0.1 793,205 - GFF3878 0.63 -0.8 793,205 - GFF3878 0.63 -0.2 793,205 - GFF3878 0.63 -2.7 793,205 - GFF3878 0.63 -0.2 793,423 + GFF3878 0.85 -1.3 793,423 + GFF3878 0.85 -0.2 793,423 + GFF3878 0.85 -0.1
Or see this region's nucleotide sequence