Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3614 and GFF3615 are separated by 29 nucleotides GFF3615 and GFF3616 are separated by 210 nucleotides GFF3616 and GFF3617 are separated by 340 nucleotides
GFF3614 - putative exported protein, at 502,134 to 503,135
GFF3614
GFF3615 - hypothetical protein, at 503,165 to 504,112
GFF3615
GFF3616 - Transcriptional regulator, MarR family, at 504,323 to 504,661
GFF3616
GFF3617 - hypothetical protein, at 505,002 to 505,241
GFF3617
Position (kb) 503
504
505 Strain fitness (log2 ratio) -1
0
1
2 at 502.195 kb on + strand at 502.261 kb on + strand, within GFF3614 at 502.262 kb on - strand, within GFF3614 at 502.262 kb on - strand, within GFF3614 at 502.370 kb on - strand, within GFF3614 at 502.561 kb on + strand, within GFF3614 at 502.561 kb on + strand, within GFF3614 at 502.561 kb on + strand, within GFF3614 at 502.624 kb on + strand, within GFF3614 at 502.625 kb on - strand, within GFF3614 at 502.652 kb on - strand, within GFF3614 at 502.684 kb on + strand, within GFF3614 at 502.685 kb on - strand, within GFF3614 at 502.789 kb on + strand, within GFF3614 at 503.434 kb on - strand, within GFF3615 at 503.512 kb on - strand, within GFF3615 at 503.664 kb on + strand, within GFF3615 at 503.706 kb on + strand, within GFF3615 at 503.707 kb on - strand, within GFF3615 at 503.872 kb on - strand, within GFF3615 at 503.872 kb on - strand, within GFF3615 at 504.048 kb on + strand at 504.263 kb on + strand at 504.264 kb on - strand at 504.718 kb on + strand at 504.718 kb on + strand at 504.719 kb on - strand at 504.739 kb on + strand at 504.739 kb on + strand at 504.740 kb on - strand at 504.740 kb on - strand at 504.913 kb on + strand at 504.913 kb on + strand at 504.914 kb on - strand at 504.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 502,195 + +0.1 502,261 + GFF3614 0.13 -0.8 502,262 - GFF3614 0.13 +0.6 502,262 - GFF3614 0.13 +0.6 502,370 - GFF3614 0.24 -0.4 502,561 + GFF3614 0.43 +0.6 502,561 + GFF3614 0.43 +0.4 502,561 + GFF3614 0.43 -0.5 502,624 + GFF3614 0.49 -0.4 502,625 - GFF3614 0.49 +0.4 502,652 - GFF3614 0.52 +0.0 502,684 + GFF3614 0.55 +0.3 502,685 - GFF3614 0.55 -0.0 502,789 + GFF3614 0.65 -1.4 503,434 - GFF3615 0.28 -0.8 503,512 - GFF3615 0.37 +1.6 503,664 + GFF3615 0.53 +0.4 503,706 + GFF3615 0.57 -0.8 503,707 - GFF3615 0.57 +0.9 503,872 - GFF3615 0.75 +0.6 503,872 - GFF3615 0.75 +0.5 504,048 + -0.2 504,263 + -0.2 504,264 - +0.1 504,718 + +0.2 504,718 + -0.6 504,719 - -0.0 504,739 + +0.6 504,739 + -0.1 504,740 - +1.4 504,740 - -0.2 504,913 + +2.2 504,913 + -0.0 504,914 - -0.1 504,914 - -0.6
Or see this region's nucleotide sequence