Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3558 and GFF3559 are separated by 10 nucleotides GFF3559 and GFF3560 are separated by 261 nucleotides GFF3560 and GFF3561 are separated by 33 nucleotides
GFF3558 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 449,605 to 450,381
GFF3558
GFF3559 - Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70), at 450,392 to 451,039
GFF3559
GFF3560 - tRNA-dihydrouridine synthase C (EC 1.-.-.-), at 451,301 to 452,302
GFF3560
GFF3561 - Glutamate--cysteine ligase (EC 6.3.2.2), at 452,336 to 453,895
GFF3561
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 450.510 kb on + strand, within GFF3559 at 450.510 kb on + strand, within GFF3559 at 450.510 kb on + strand, within GFF3559 at 450.511 kb on - strand, within GFF3559 at 450.511 kb on - strand, within GFF3559 at 450.528 kb on - strand, within GFF3559 at 450.992 kb on + strand at 450.993 kb on - strand at 451.028 kb on + strand at 451.028 kb on + strand at 451.028 kb on + strand at 451.029 kb on - strand at 451.293 kb on + strand at 451.293 kb on + strand at 451.294 kb on - strand at 451.294 kb on - strand at 451.294 kb on - strand at 451.727 kb on + strand, within GFF3560 at 451.728 kb on - strand, within GFF3560 at 451.839 kb on - strand, within GFF3560 at 451.839 kb on - strand, within GFF3560 at 452.138 kb on + strand, within GFF3560 at 452.139 kb on - strand, within GFF3560 at 452.251 kb on + strand at 452.301 kb on - strand at 452.335 kb on + strand at 452.335 kb on + strand at 452.335 kb on + strand at 452.335 kb on + strand at 452.335 kb on + strand at 452.335 kb on + strand at 452.336 kb on - strand at 452.336 kb on - strand at 452.786 kb on + strand, within GFF3561 at 452.786 kb on + strand, within GFF3561 at 452.786 kb on + strand, within GFF3561 at 452.786 kb on + strand, within GFF3561 at 452.786 kb on + strand, within GFF3561 at 452.787 kb on - strand, within GFF3561 at 452.787 kb on - strand, within GFF3561 at 452.787 kb on - strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.960 kb on + strand, within GFF3561 at 452.961 kb on - strand, within GFF3561 at 452.961 kb on - strand, within GFF3561 at 453.038 kb on + strand, within GFF3561 at 453.039 kb on - strand, within GFF3561 at 453.039 kb on - strand, within GFF3561 at 453.039 kb on - strand, within GFF3561 at 453.039 kb on - strand, within GFF3561 at 453.039 kb on - strand, within GFF3561 at 453.101 kb on + strand, within GFF3561 at 453.101 kb on + strand, within GFF3561 at 453.137 kb on + strand, within GFF3561 at 453.137 kb on + strand, within GFF3561 at 453.137 kb on + strand, within GFF3561 at 453.138 kb on - strand, within GFF3561 at 453.182 kb on + strand, within GFF3561 at 453.182 kb on + strand, within GFF3561 at 453.183 kb on - strand, within GFF3561 at 453.213 kb on - strand, within GFF3561 at 453.260 kb on + strand, within GFF3561 at 453.260 kb on + strand, within GFF3561 at 453.260 kb on + strand, within GFF3561 at 453.261 kb on - strand, within GFF3561 at 453.261 kb on - strand, within GFF3561
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 450,510 + GFF3559 0.18 -2.2 450,510 + GFF3559 0.18 +0.4 450,510 + GFF3559 0.18 +0.1 450,511 - GFF3559 0.18 -0.2 450,511 - GFF3559 0.18 -0.6 450,528 - GFF3559 0.21 +0.8 450,992 + -0.4 450,993 - -0.5 451,028 + +0.2 451,028 + -0.6 451,028 + -0.1 451,029 - -0.5 451,293 + -0.8 451,293 + -0.1 451,294 - -1.4 451,294 - -1.1 451,294 - +3.2 451,727 + GFF3560 0.43 +0.4 451,728 - GFF3560 0.43 -0.9 451,839 - GFF3560 0.54 -1.2 451,839 - GFF3560 0.54 +0.1 452,138 + GFF3560 0.84 +0.5 452,139 - GFF3560 0.84 -0.5 452,251 + +0.3 452,301 - -0.1 452,335 + +0.5 452,335 + +0.6 452,335 + +0.2 452,335 + -0.4 452,335 + -0.4 452,335 + +0.8 452,336 - -0.6 452,336 - +1.8 452,786 + GFF3561 0.29 +1.6 452,786 + GFF3561 0.29 -1.3 452,786 + GFF3561 0.29 +0.6 452,786 + GFF3561 0.29 +0.0 452,786 + GFF3561 0.29 -0.4 452,787 - GFF3561 0.29 -1.2 452,787 - GFF3561 0.29 -0.6 452,787 - GFF3561 0.29 -2.1 452,960 + GFF3561 0.40 -0.3 452,960 + GFF3561 0.40 -0.7 452,960 + GFF3561 0.40 -0.4 452,960 + GFF3561 0.40 -0.7 452,960 + GFF3561 0.40 -0.7 452,960 + GFF3561 0.40 -0.4 452,960 + GFF3561 0.40 -1.9 452,960 + GFF3561 0.40 -0.7 452,961 - GFF3561 0.40 +1.2 452,961 - GFF3561 0.40 +0.2 453,038 + GFF3561 0.45 -0.9 453,039 - GFF3561 0.45 +0.2 453,039 - GFF3561 0.45 -0.6 453,039 - GFF3561 0.45 +0.9 453,039 - GFF3561 0.45 -0.2 453,039 - GFF3561 0.45 -0.4 453,101 + GFF3561 0.49 +0.0 453,101 + GFF3561 0.49 -0.1 453,137 + GFF3561 0.51 -0.2 453,137 + GFF3561 0.51 +0.6 453,137 + GFF3561 0.51 -0.7 453,138 - GFF3561 0.51 -0.7 453,182 + GFF3561 0.54 -0.8 453,182 + GFF3561 0.54 -0.3 453,183 - GFF3561 0.54 -1.2 453,213 - GFF3561 0.56 -1.2 453,260 + GFF3561 0.59 -0.1 453,260 + GFF3561 0.59 +0.6 453,260 + GFF3561 0.59 -0.5 453,261 - GFF3561 0.59 -0.4 453,261 - GFF3561 0.59 -0.3
Or see this region's nucleotide sequence