Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3504 and GFF3505 are separated by 44 nucleotides
GFF3504 - hypothetical protein, at 382,728 to 383,447
GFF3504
GFF3505 - FIG00443277: hypothetical protein, at 383,492 to 384,583
GFF3505
Position (kb) 383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.509 kb on + strand at 382.509 kb on + strand at 382.510 kb on - strand at 382.532 kb on + strand at 382.532 kb on + strand at 382.532 kb on + strand at 382.532 kb on + strand at 382.532 kb on + strand at 382.532 kb on + strand at 382.533 kb on - strand at 382.533 kb on - strand at 382.533 kb on - strand at 382.533 kb on - strand at 382.533 kb on - strand at 382.541 kb on - strand at 382.541 kb on - strand at 382.556 kb on + strand at 382.556 kb on + strand at 382.557 kb on - strand at 382.604 kb on + strand at 382.604 kb on - strand at 382.605 kb on - strand at 382.605 kb on - strand at 382.708 kb on + strand at 382.709 kb on - strand at 382.709 kb on - strand at 382.709 kb on - strand at 382.709 kb on - strand at 382.709 kb on - strand at 382.709 kb on - strand at 382.709 kb on - strand at 382.902 kb on + strand, within GFF3504 at 382.902 kb on + strand, within GFF3504 at 382.903 kb on - strand, within GFF3504 at 382.903 kb on - strand, within GFF3504 at 382.903 kb on - strand, within GFF3504 at 382.903 kb on - strand, within GFF3504 at 382.903 kb on - strand, within GFF3504 at 382.924 kb on - strand, within GFF3504 at 382.962 kb on + strand, within GFF3504 at 383.081 kb on - strand, within GFF3504 at 383.081 kb on - strand, within GFF3504 at 383.188 kb on - strand, within GFF3504 at 383.188 kb on - strand, within GFF3504 at 383.217 kb on + strand, within GFF3504 at 383.218 kb on - strand, within GFF3504 at 383.218 kb on - strand, within GFF3504 at 383.226 kb on + strand, within GFF3504 at 383.226 kb on + strand, within GFF3504 at 383.226 kb on + strand, within GFF3504 at 383.227 kb on - strand, within GFF3504 at 383.227 kb on - strand, within GFF3504 at 383.347 kb on + strand, within GFF3504 at 383.431 kb on + strand at 383.432 kb on - strand at 383.432 kb on - strand at 383.554 kb on - strand at 383.554 kb on - strand at 383.554 kb on - strand at 383.560 kb on + strand at 383.561 kb on - strand at 383.564 kb on + strand at 383.564 kb on + strand at 383.564 kb on + strand at 383.564 kb on + strand at 383.564 kb on + strand at 383.564 kb on + strand at 383.565 kb on - strand at 383.849 kb on + strand, within GFF3505 at 383.849 kb on + strand, within GFF3505 at 383.850 kb on - strand, within GFF3505 at 383.864 kb on + strand, within GFF3505 at 383.865 kb on - strand, within GFF3505 at 383.922 kb on - strand, within GFF3505 at 383.922 kb on - strand, within GFF3505 at 383.922 kb on - strand, within GFF3505 at 383.957 kb on - strand, within GFF3505 at 384.072 kb on - strand, within GFF3505 at 384.099 kb on - strand, within GFF3505 at 384.122 kb on + strand, within GFF3505 at 384.122 kb on + strand, within GFF3505 at 384.384 kb on + strand, within GFF3505 at 384.473 kb on - strand, within GFF3505 at 384.508 kb on + strand at 384.509 kb on - strand at 384.598 kb on + strand at 384.598 kb on + strand at 384.598 kb on + strand at 384.598 kb on + strand at 384.598 kb on + strand at 384.722 kb on - strand at 384.734 kb on + strand at 384.802 kb on + strand at 384.803 kb on - strand at 384.803 kb on - strand at 385.100 kb on - strand at 385.100 kb on - strand at 385.129 kb on - strand at 385.241 kb on - strand at 385.286 kb on - strand at 385.300 kb on - strand at 385.346 kb on + strand at 385.346 kb on + strand at 385.421 kb on + strand at 385.422 kb on - strand at 385.521 kb on + strand at 385.521 kb on + strand at 385.521 kb on + strand at 385.522 kb on - strand at 385.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 382,509 + -0.3 382,509 + +0.4 382,510 - +1.8 382,532 + +0.4 382,532 + -1.9 382,532 + -0.4 382,532 + -1.0 382,532 + +0.1 382,532 + -0.2 382,533 - -0.5 382,533 - +0.2 382,533 - -0.1 382,533 - -0.1 382,533 - +0.1 382,541 - -1.6 382,541 - +0.2 382,556 + -0.1 382,556 + +0.6 382,557 - +0.4 382,604 + +0.2 382,604 - +0.6 382,605 - -2.1 382,605 - -0.7 382,708 + -0.4 382,709 - -0.4 382,709 - +0.6 382,709 - -0.4 382,709 - +0.1 382,709 - -1.1 382,709 - -0.2 382,709 - +0.4 382,902 + GFF3504 0.24 -1.8 382,902 + GFF3504 0.24 +0.3 382,903 - GFF3504 0.24 +2.2 382,903 - GFF3504 0.24 +0.2 382,903 - GFF3504 0.24 -0.1 382,903 - GFF3504 0.24 +0.6 382,903 - GFF3504 0.24 +0.9 382,924 - GFF3504 0.27 +1.6 382,962 + GFF3504 0.33 +0.0 383,081 - GFF3504 0.49 +0.2 383,081 - GFF3504 0.49 +0.8 383,188 - GFF3504 0.64 +0.2 383,188 - GFF3504 0.64 +1.2 383,217 + GFF3504 0.68 -0.7 383,218 - GFF3504 0.68 +1.6 383,218 - GFF3504 0.68 +1.2 383,226 + GFF3504 0.69 -0.4 383,226 + GFF3504 0.69 -0.0 383,226 + GFF3504 0.69 +0.2 383,227 - GFF3504 0.69 +0.2 383,227 - GFF3504 0.69 +0.4 383,347 + GFF3504 0.86 -0.4 383,431 + +0.3 383,432 - -1.7 383,432 - +0.5 383,554 - +0.0 383,554 - +0.3 383,554 - -0.4 383,560 + -1.1 383,561 - -0.5 383,564 + +1.2 383,564 + -0.2 383,564 + +0.3 383,564 + -0.3 383,564 + -0.1 383,564 + -0.9 383,565 - -0.8 383,849 + GFF3505 0.33 -0.9 383,849 + GFF3505 0.33 +0.0 383,850 - GFF3505 0.33 -0.2 383,864 + GFF3505 0.34 -0.2 383,865 - GFF3505 0.34 +0.4 383,922 - GFF3505 0.39 +2.0 383,922 - GFF3505 0.39 +0.3 383,922 - GFF3505 0.39 -0.1 383,957 - GFF3505 0.43 +0.1 384,072 - GFF3505 0.53 +0.3 384,099 - GFF3505 0.56 +0.0 384,122 + GFF3505 0.58 +0.7 384,122 + GFF3505 0.58 +0.2 384,384 + GFF3505 0.82 -0.4 384,473 - GFF3505 0.90 -1.1 384,508 + +0.6 384,509 - -1.8 384,598 + +1.2 384,598 + -0.1 384,598 + +0.0 384,598 + -0.4 384,598 + -0.4 384,722 - +0.2 384,734 + -0.1 384,802 + +0.2 384,803 - -0.1 384,803 - -0.4 385,100 - -0.2 385,100 - +1.2 385,129 - -0.1 385,241 - +0.4 385,286 - -0.6 385,300 - +1.0 385,346 + -0.6 385,346 + -0.5 385,421 + -1.6 385,422 - +0.0 385,521 + +0.2 385,521 + -0.8 385,521 + +2.0 385,522 - -2.4 385,522 - +0.3
Or see this region's nucleotide sequence