Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3474 and GFF3475 are separated by 16 nucleotides GFF3475 and GFF3476 overlap by 4 nucleotides GFF3476 and GFF3477 are separated by 17 nucleotides GFF3477 and GFF3478 are separated by 2 nucleotides
GFF3474 - hypothetical protein, at 355,456 to 356,646
GFF3474
GFF3475 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 356,663 to 357,430
GFF3475
GFF3476 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 357,427 to 358,143
GFF3476
GFF3477 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 358,161 to 359,033
GFF3477
GFF3478 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 359,036 to 360,040
GFF3478
Position (kb) 357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 356.436 kb on + strand, within GFF3474 at 356.619 kb on + strand at 356.742 kb on + strand, within GFF3475 at 356.743 kb on - strand, within GFF3475 at 356.917 kb on + strand, within GFF3475 at 357.677 kb on + strand, within GFF3476 at 357.678 kb on - strand, within GFF3476 at 358.052 kb on - strand, within GFF3476 at 358.142 kb on - strand at 358.142 kb on - strand at 358.212 kb on + strand at 358.212 kb on + strand at 358.212 kb on + strand at 358.213 kb on - strand at 358.242 kb on - strand at 358.245 kb on + strand at 358.246 kb on - strand at 358.302 kb on + strand, within GFF3477 at 358.479 kb on - strand, within GFF3477 at 358.923 kb on + strand, within GFF3477 at 358.924 kb on - strand, within GFF3477 at 358.924 kb on - strand, within GFF3477
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 356,436 + GFF3474 0.82 +0.1 356,619 + +0.9 356,742 + GFF3475 0.10 -0.1 356,743 - GFF3475 0.10 +0.8 356,917 + GFF3475 0.33 -0.1 357,677 + GFF3476 0.35 -1.1 357,678 - GFF3476 0.35 +0.2 358,052 - GFF3476 0.87 +0.3 358,142 - +0.6 358,142 - -0.8 358,212 + +0.6 358,212 + +0.0 358,212 + +0.2 358,213 - -0.1 358,242 - -0.6 358,245 + +1.1 358,246 - +0.8 358,302 + GFF3477 0.16 -1.4 358,479 - GFF3477 0.36 -3.4 358,923 + GFF3477 0.87 -0.9 358,924 - GFF3477 0.87 -1.1 358,924 - GFF3477 0.87 +0.5
Or see this region's nucleotide sequence