Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF346

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
7,022	+		GFF345	0.46	-0.6
7,857	+				-0.6
7,858	-				-0.3
8,166	+		GFF346	0.20	-2.3
8,343	+		GFF346	0.30	-1.7
8,344	-		GFF346	0.30	-1.1
8,344	-		GFF346	0.30	-1.1
8,532	+		GFF346	0.40	-0.1
8,532	+		GFF346	0.40	-0.8
8,532	+		GFF346	0.40	-0.4
8,559	+		GFF346	0.41	+0.6
8,631	+		GFF346	0.45	+1.7
8,631	+		GFF346	0.45	+0.3
8,632	-		GFF346	0.45	-0.1
8,632	-		GFF346	0.45	-0.2
8,695	-		GFF346	0.49	-1.6
8,745	+		GFF346	0.51	-0.3
8,746	-		GFF346	0.51	-0.1
8,904	+		GFF346	0.60	+0.6
8,904	+		GFF346	0.60	-1.0
8,904	+		GFF346	0.60	-1.0
8,905	-		GFF346	0.60	-0.5
8,916	+		GFF346	0.61	-0.5
8,916	+		GFF346	0.61	+0.7
9,039	+		GFF346	0.67	-0.3
9,039	+		GFF346	0.67	+0.6
9,040	-		GFF346	0.67	-0.2
9,075	+		GFF346	0.69	+0.7
9,075	+		GFF346	0.69	+0.3
9,076	-		GFF346	0.69	-0.3
9,078	+		GFF346	0.69	-1.3
9,079	-		GFF346	0.69	+0.9
9,079	-		GFF346	0.69	-0.1
9,079	-		GFF346	0.69	+0.1
9,079	-		GFF346	0.69	-0.4
9,079	-		GFF346	0.69	-1.5
9,424	-		GFF346	0.88	-0.0
9,619	-				-0.2
9,619	-				-0.6
9,669	+				+0.2
9,689	+				-0.0
9,689	+				-0.6
9,690	-				+0.7
9,768	+				-0.4
9,769	-				-1.3
9,772	+				+0.0
9,772	+				-1.0
9,772	+				+0.2
9,772	+				+0.1
9,772	+				-0.3
9,772	+				+3.3
9,773	-				+0.6
9,876	+				-0.0
9,877	-				+0.3
9,877	-				-0.1
9,877	-				-0.5
9,877	-				+0.6
9,951	+		GFF347	0.13	-0.3
9,951	+		GFF347	0.13	-0.7
9,952	-		GFF347	0.13	+0.0
10,131	+		GFF347	0.26	+1.1
10,132	-		GFF347	0.26	+0.4
10,132	-		GFF347	0.26	+0.2
10,360	-		GFF347	0.42	+0.1
10,407	+		GFF347	0.45	-1.1
10,434	+		GFF347	0.47	+1.3
10,446	+		GFF347	0.48	+0.4
10,497	+		GFF347	0.51	-0.8
10,497	+		GFF347	0.51	+1.3
10,497	+		GFF347	0.51	+1.0
10,497	+		GFF347	0.51	+1.3
10,498	-		GFF347	0.51	-1.5
10,498	-		GFF347	0.51	+0.4
10,498	-		GFF347	0.51	-0.8
10,498	-		GFF347	0.51	-0.8
10,498	-		GFF347	0.51	-1.6