Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3445 and GFF3446 are separated by 2 nucleotides GFF3446 and GFF3447 are separated by 149 nucleotides GFF3447 and GFF3448 are separated by 13 nucleotides
GFF3445 - Conjugative transfer protein TrbI, at 325,499 to 326,818
GFF3445
GFF3446 - Conjugative transfer protein TrbG, at 326,821 to 327,681
GFF3446
GFF3447 - Conjugative transfer protein TrbF, at 327,831 to 328,535
GFF3447
GFF3448 - Conjugative transfer protein TrbL, at 328,549 to 329,919
GFF3448
Position (kb) 326
327
328 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 325.912 kb on + strand, within GFF3445 at 325.914 kb on + strand, within GFF3445 at 325.933 kb on - strand, within GFF3445 at 326.427 kb on + strand, within GFF3445 at 326.545 kb on + strand, within GFF3445 at 326.545 kb on + strand, within GFF3445 at 326.900 kb on - strand at 326.900 kb on - strand at 326.933 kb on + strand, within GFF3446 at 326.933 kb on + strand, within GFF3446 at 326.934 kb on - strand, within GFF3446 at 326.936 kb on + strand, within GFF3446 at 326.936 kb on + strand, within GFF3446 at 326.937 kb on - strand, within GFF3446 at 326.937 kb on - strand, within GFF3446 at 327.041 kb on + strand, within GFF3446 at 327.266 kb on + strand, within GFF3446 at 327.477 kb on - strand, within GFF3446 at 327.477 kb on - strand, within GFF3446 at 327.793 kb on + strand at 327.890 kb on - strand at 327.890 kb on - strand at 327.998 kb on - strand, within GFF3447 at 328.114 kb on + strand, within GFF3447 at 328.150 kb on + strand, within GFF3447 at 328.151 kb on - strand, within GFF3447 at 328.157 kb on - strand, within GFF3447 at 328.324 kb on + strand, within GFF3447 at 328.324 kb on + strand, within GFF3447 at 328.324 kb on + strand, within GFF3447 at 328.325 kb on - strand, within GFF3447 at 328.325 kb on - strand, within GFF3447 at 328.325 kb on - strand, within GFF3447 at 328.326 kb on - strand, within GFF3447
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 325,912 + GFF3445 0.31 -0.2 325,914 + GFF3445 0.31 +0.7 325,933 - GFF3445 0.33 -0.2 326,427 + GFF3445 0.70 +0.4 326,545 + GFF3445 0.79 -0.6 326,545 + GFF3445 0.79 +0.2 326,900 - -0.5 326,900 - -0.7 326,933 + GFF3446 0.13 -0.2 326,933 + GFF3446 0.13 -0.6 326,934 - GFF3446 0.13 -0.0 326,936 + GFF3446 0.13 -0.6 326,936 + GFF3446 0.13 +0.4 326,937 - GFF3446 0.13 -0.3 326,937 - GFF3446 0.13 -2.9 327,041 + GFF3446 0.26 -0.7 327,266 + GFF3446 0.52 +0.0 327,477 - GFF3446 0.76 +0.3 327,477 - GFF3446 0.76 -0.7 327,793 + +0.6 327,890 - +0.1 327,890 - +0.1 327,998 - GFF3447 0.24 -0.1 328,114 + GFF3447 0.40 +0.2 328,150 + GFF3447 0.45 -0.6 328,151 - GFF3447 0.45 -0.0 328,157 - GFF3447 0.46 -0.3 328,324 + GFF3447 0.70 +1.0 328,324 + GFF3447 0.70 +0.6 328,324 + GFF3447 0.70 +0.1 328,325 - GFF3447 0.70 +0.3 328,325 - GFF3447 0.70 +0.3 328,325 - GFF3447 0.70 -0.3 328,326 - GFF3447 0.70 -0.2
Or see this region's nucleotide sequence