Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3401 and GFF3402 overlap by 4 nucleotides GFF3402 and GFF3403 overlap by 8 nucleotides GFF3403 and GFF3404 overlap by 1 nucleotides
GFF3401 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 285,743 to 287,683
GFF3401
GFF3402 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 287,680 to 288,468
GFF3402
GFF3403 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 288,461 to 289,504
GFF3403
GFF3404 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 289,504 to 290,655
GFF3404
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 287.700 kb on - strand at 288.287 kb on + strand, within GFF3402 at 288.766 kb on - strand, within GFF3403 at 288.820 kb on - strand, within GFF3403 at 289.167 kb on + strand, within GFF3403 at 289.560 kb on - strand at 289.560 kb on - strand at 289.560 kb on - strand at 289.617 kb on - strand at 289.694 kb on + strand, within GFF3404 at 289.694 kb on + strand, within GFF3404 at 289.853 kb on + strand, within GFF3404 at 289.853 kb on + strand, within GFF3404 at 289.854 kb on - strand, within GFF3404 at 289.923 kb on - strand, within GFF3404 at 290.358 kb on - strand, within GFF3404 at 290.435 kb on + strand, within GFF3404 at 290.462 kb on + strand, within GFF3404 at 290.462 kb on + strand, within GFF3404 at 290.463 kb on - strand, within GFF3404
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 287,700 - -0.3 288,287 + GFF3402 0.77 -0.9 288,766 - GFF3403 0.29 -0.4 288,820 - GFF3403 0.34 +0.2 289,167 + GFF3403 0.68 -1.3 289,560 - -3.0 289,560 - +0.2 289,560 - -0.3 289,617 - +0.4 289,694 + GFF3404 0.16 -0.7 289,694 + GFF3404 0.16 +1.2 289,853 + GFF3404 0.30 -1.0 289,853 + GFF3404 0.30 +0.4 289,854 - GFF3404 0.30 +0.2 289,923 - GFF3404 0.36 +0.4 290,358 - GFF3404 0.74 -1.1 290,435 + GFF3404 0.81 -0.3 290,462 + GFF3404 0.83 -0.7 290,462 + GFF3404 0.83 -0.6 290,463 - GFF3404 0.83 +0.1
Or see this region's nucleotide sequence