Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3393 and GFF3394 are separated by 4 nucleotides GFF3394 and GFF3395 are separated by 6 nucleotides GFF3395 and GFF3396 are separated by 4 nucleotides GFF3396 and GFF3397 overlap by 4 nucleotides
GFF3393 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 277,177 to 278,652
GFF3393
GFF3394 - Dioxygenases related to 2-nitropropane dioxygenase, at 278,657 to 279,640
GFF3394
GFF3395 - Enoyl-CoA hydratase (EC 4.2.1.17), at 279,647 to 280,438
GFF3395
GFF3396 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 280,443 to 281,264
GFF3396
GFF3397 - hypothetical protein, at 281,261 to 282,493
GFF3397
Position (kb) 279
280
281 Strain fitness (log2 ratio) -1
0
1
2 at 278.721 kb on + strand at 278.721 kb on + strand at 279.058 kb on - strand, within GFF3394 at 279.058 kb on - strand, within GFF3394 at 279.757 kb on - strand, within GFF3395 at 279.990 kb on + strand, within GFF3395 at 279.991 kb on - strand, within GFF3395 at 280.162 kb on - strand, within GFF3395 at 280.525 kb on - strand at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.526 kb on - strand, within GFF3396 at 280.603 kb on + strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.604 kb on - strand, within GFF3396 at 280.816 kb on + strand, within GFF3396 at 280.816 kb on + strand, within GFF3396 at 281.409 kb on + strand, within GFF3397
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 278,721 + -0.1 278,721 + -0.1 279,058 - GFF3394 0.41 +0.4 279,058 - GFF3394 0.41 +0.2 279,757 - GFF3395 0.14 +2.2 279,990 + GFF3395 0.43 +0.0 279,991 - GFF3395 0.43 +0.9 280,162 - GFF3395 0.65 -0.3 280,525 - +1.7 280,526 - GFF3396 0.10 +0.2 280,526 - GFF3396 0.10 -0.1 280,526 - GFF3396 0.10 +0.2 280,526 - GFF3396 0.10 +0.2 280,603 + GFF3396 0.19 +0.1 280,604 - GFF3396 0.20 +0.4 280,604 - GFF3396 0.20 +0.8 280,604 - GFF3396 0.20 -0.1 280,816 + GFF3396 0.45 -1.1 280,816 + GFF3396 0.45 -0.6 281,409 + GFF3397 0.12 +0.5
Or see this region's nucleotide sequence