Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3335 and GFF3336 are separated by 119 nucleotides GFF3336 and GFF3337 are separated by 7 nucleotides GFF3337 and GFF3338 are separated by 366 nucleotides GFF3338 and GFF3339 are separated by 82 nucleotides
GFF3335 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 220,696 to 221,457
GFF3335
GFF3336 - Acyl carrier protein, at 221,577 to 221,816
GFF3336
GFF3337 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 221,824 to 223,068
GFF3337
GFF3338 - hypothetical protein, at 223,435 to 223,569
GFF3338
GFF3339 - RNA polymerase sigma factor RpoE, at 223,652 to 224,245
GFF3339
Position (kb) 221
222
223
224 Strain fitness (log2 ratio) -2
-1
0
1 at 221.521 kb on + strand at 221.521 kb on + strand at 221.521 kb on + strand at 221.551 kb on + strand at 223.085 kb on + strand at 223.085 kb on + strand at 223.085 kb on + strand at 223.085 kb on + strand at 223.085 kb on + strand at 223.085 kb on + strand at 223.085 kb on + strand at 223.086 kb on - strand at 223.153 kb on + strand at 223.153 kb on + strand at 223.153 kb on + strand at 223.153 kb on + strand at 223.154 kb on - strand at 223.154 kb on - strand at 223.154 kb on - strand at 223.154 kb on - strand at 223.154 kb on - strand at 223.154 kb on - strand at 223.589 kb on + strand at 223.589 kb on + strand at 223.590 kb on - strand at 223.591 kb on + strand at 223.591 kb on + strand at 223.591 kb on + strand at 223.591 kb on + strand at 223.592 kb on - strand at 223.592 kb on - strand at 223.592 kb on - strand at 223.712 kb on + strand, within GFF3339 at 223.712 kb on + strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.713 kb on - strand, within GFF3339 at 223.802 kb on + strand, within GFF3339 at 223.803 kb on - strand, within GFF3339 at 223.803 kb on - strand, within GFF3339 at 223.803 kb on - strand, within GFF3339 at 223.841 kb on + strand, within GFF3339 at 223.841 kb on + strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.842 kb on - strand, within GFF3339 at 223.854 kb on - strand, within GFF3339 at 223.975 kb on - strand, within GFF3339
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 221,521 + -0.4 221,521 + +0.2 221,521 + -0.3 221,551 + -1.8 223,085 + +0.8 223,085 + -0.5 223,085 + -0.4 223,085 + +0.2 223,085 + +0.2 223,085 + +0.9 223,085 + +0.2 223,086 - -0.8 223,153 + -2.1 223,153 + +0.9 223,153 + +0.3 223,153 + +0.4 223,154 - -0.2 223,154 - -0.2 223,154 - +0.7 223,154 - -1.6 223,154 - +0.8 223,154 - +0.5 223,589 + -0.1 223,589 + -0.8 223,590 - +0.2 223,591 + +0.2 223,591 + +0.3 223,591 + -0.3 223,591 + +0.2 223,592 - -0.1 223,592 - -0.2 223,592 - -0.0 223,712 + GFF3339 0.10 +0.5 223,712 + GFF3339 0.10 -0.5 223,713 - GFF3339 0.10 +0.7 223,713 - GFF3339 0.10 -1.6 223,713 - GFF3339 0.10 -0.9 223,713 - GFF3339 0.10 -0.5 223,802 + GFF3339 0.25 -1.5 223,803 - GFF3339 0.25 +0.1 223,803 - GFF3339 0.25 +1.2 223,803 - GFF3339 0.25 -0.8 223,841 + GFF3339 0.32 -0.8 223,841 + GFF3339 0.32 -0.4 223,842 - GFF3339 0.32 -0.8 223,842 - GFF3339 0.32 -2.2 223,842 - GFF3339 0.32 -1.9 223,842 - GFF3339 0.32 -0.8 223,854 - GFF3339 0.34 +0.0 223,975 - GFF3339 0.54 -0.1
Or see this region's nucleotide sequence