Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF328 and GFF329 are separated by 19 nucleotides GFF329 and GFF330 are separated by 46 nucleotides GFF330 and GFF331 are separated by 48 nucleotides GFF331 and GFF332 are separated by 161 nucleotides
GFF328 - Transmembrane regulator protein PrtR, at 349,324 to 350,223
GFF328
GFF329 - RNA polymerase sigma-54 factor RpoN, at 350,243 to 350,746
GFF329
GFF330 - Orf21; putative lipoprotein, at 350,793 to 351,182
GFF330
GFF331 - hypothetical protein, at 351,231 to 351,662
GFF331
GFF332 - Putative membrane protein YeiH, at 351,824 to 352,930
GFF332
Position (kb) 350
351
352 Strain fitness (log2 ratio) -1
0
1 at 350.218 kb on - strand at 350.238 kb on + strand at 350.239 kb on - strand at 350.239 kb on - strand at 350.241 kb on - strand at 350.374 kb on - strand, within GFF329 at 350.873 kb on - strand, within GFF330 at 350.890 kb on + strand, within GFF330 at 350.932 kb on + strand, within GFF330 at 350.933 kb on - strand, within GFF330 at 350.933 kb on - strand, within GFF330 at 351.043 kb on + strand, within GFF330 at 351.195 kb on + strand at 351.213 kb on - strand at 351.313 kb on + strand, within GFF331 at 351.475 kb on + strand, within GFF331 at 351.476 kb on - strand, within GFF331 at 351.476 kb on - strand, within GFF331 at 351.527 kb on - strand, within GFF331 at 351.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 350,218 - -0.3 350,238 + -0.2 350,239 - -1.0 350,239 - -0.3 350,241 - -0.0 350,374 - GFF329 0.26 -0.4 350,873 - GFF330 0.21 -0.7 350,890 + GFF330 0.25 -0.2 350,932 + GFF330 0.36 -0.2 350,933 - GFF330 0.36 +0.3 350,933 - GFF330 0.36 -0.3 351,043 + GFF330 0.64 -0.0 351,195 + -0.4 351,213 - +0.0 351,313 + GFF331 0.19 -1.4 351,475 + GFF331 0.56 -0.7 351,476 - GFF331 0.57 -0.0 351,476 - GFF331 0.57 -0.6 351,527 - GFF331 0.69 -0.9 351,766 + -1.0
Or see this region's nucleotide sequence