Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3209 and GFF3210 are separated by 47 nucleotides GFF3210 and GFF3211 overlap by 23 nucleotides GFF3211 and GFF3212 are separated by 553 nucleotides
GFF3209 - cell filamentation protein, at 94,894 to 95,643
GFF3209
GFF3210 - hypothetical protein, at 95,691 to 95,969
GFF3210
GFF3211 - hypothetical protein, at 95,947 to 96,204
GFF3211
GFF3212 - hypothetical protein, at 96,758 to 96,886
GFF3212
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 95.023 kb on + strand, within GFF3209 at 95.024 kb on - strand, within GFF3209 at 95.024 kb on - strand, within GFF3209 at 95.095 kb on + strand, within GFF3209 at 95.096 kb on - strand, within GFF3209 at 95.096 kb on - strand, within GFF3209 at 95.383 kb on + strand, within GFF3209 at 95.383 kb on + strand, within GFF3209 at 95.384 kb on - strand, within GFF3209 at 95.384 kb on - strand, within GFF3209 at 95.440 kb on + strand, within GFF3209 at 95.440 kb on + strand, within GFF3209 at 95.440 kb on + strand, within GFF3209 at 95.440 kb on + strand, within GFF3209 at 95.440 kb on + strand, within GFF3209 at 95.441 kb on - strand, within GFF3209 at 95.441 kb on - strand, within GFF3209 at 95.551 kb on + strand, within GFF3209 at 95.551 kb on + strand, within GFF3209 at 95.578 kb on + strand at 95.743 kb on + strand, within GFF3210 at 95.781 kb on + strand, within GFF3210 at 95.782 kb on - strand, within GFF3210 at 95.817 kb on + strand, within GFF3210 at 95.817 kb on + strand, within GFF3210 at 95.818 kb on - strand, within GFF3210 at 95.818 kb on - strand, within GFF3210 at 95.818 kb on - strand, within GFF3210 at 95.826 kb on + strand, within GFF3210 at 95.838 kb on + strand, within GFF3210 at 95.844 kb on + strand, within GFF3210 at 95.844 kb on + strand, within GFF3210 at 95.844 kb on + strand, within GFF3210 at 95.845 kb on - strand, within GFF3210 at 95.845 kb on - strand, within GFF3210 at 95.978 kb on + strand, within GFF3211 at 96.089 kb on + strand, within GFF3211 at 96.089 kb on + strand, within GFF3211 at 96.089 kb on + strand, within GFF3211 at 96.090 kb on - strand, within GFF3211 at 96.090 kb on - strand, within GFF3211 at 96.090 kb on - strand, within GFF3211 at 96.090 kb on - strand, within GFF3211 at 96.185 kb on + strand at 96.185 kb on + strand at 96.263 kb on + strand at 96.263 kb on + strand at 96.263 kb on + strand at 96.264 kb on - strand at 96.264 kb on - strand at 96.272 kb on + strand at 96.272 kb on + strand at 96.273 kb on - strand at 96.834 kb on + strand, within GFF3212 at 96.885 kb on - strand at 97.078 kb on + strand at 97.079 kb on - strand at 97.079 kb on - strand at 97.079 kb on - strand at 97.079 kb on - strand at 97.150 kb on + strand at 97.195 kb on + strand at 97.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 95,023 + GFF3209 0.17 +0.2 95,024 - GFF3209 0.17 -0.6 95,024 - GFF3209 0.17 -0.1 95,095 + GFF3209 0.27 +0.2 95,096 - GFF3209 0.27 -1.2 95,096 - GFF3209 0.27 -0.0 95,383 + GFF3209 0.65 -1.3 95,383 + GFF3209 0.65 +1.0 95,384 - GFF3209 0.65 +1.2 95,384 - GFF3209 0.65 +0.1 95,440 + GFF3209 0.73 +0.3 95,440 + GFF3209 0.73 +0.5 95,440 + GFF3209 0.73 +0.0 95,440 + GFF3209 0.73 -0.4 95,440 + GFF3209 0.73 +1.2 95,441 - GFF3209 0.73 -0.9 95,441 - GFF3209 0.73 +1.1 95,551 + GFF3209 0.88 -1.1 95,551 + GFF3209 0.88 -1.8 95,578 + +1.6 95,743 + GFF3210 0.19 +0.2 95,781 + GFF3210 0.32 +0.5 95,782 - GFF3210 0.33 -1.3 95,817 + GFF3210 0.45 -1.9 95,817 + GFF3210 0.45 +0.4 95,818 - GFF3210 0.46 +0.1 95,818 - GFF3210 0.46 +0.0 95,818 - GFF3210 0.46 +1.8 95,826 + GFF3210 0.48 +0.1 95,838 + GFF3210 0.53 +0.9 95,844 + GFF3210 0.55 -0.1 95,844 + GFF3210 0.55 +0.7 95,844 + GFF3210 0.55 -0.1 95,845 - GFF3210 0.55 -0.2 95,845 - GFF3210 0.55 -0.8 95,978 + GFF3211 0.12 +2.5 96,089 + GFF3211 0.55 -0.3 96,089 + GFF3211 0.55 +0.5 96,089 + GFF3211 0.55 +0.2 96,090 - GFF3211 0.55 +1.2 96,090 - GFF3211 0.55 +0.2 96,090 - GFF3211 0.55 +0.4 96,090 - GFF3211 0.55 +0.7 96,185 + -1.6 96,185 + -0.8 96,263 + -0.8 96,263 + -0.6 96,263 + -0.3 96,264 - +1.1 96,264 - -1.1 96,272 + -0.1 96,272 + +0.3 96,273 - -0.0 96,834 + GFF3212 0.59 -0.8 96,885 - +1.8 97,078 + +0.7 97,079 - -0.3 97,079 - -0.7 97,079 - -0.4 97,079 - +0.1 97,150 + +1.0 97,195 + +1.0 97,202 - -0.1
Or see this region's nucleotide sequence