Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF314 and GFF315 are separated by 210 nucleotides GFF315 and GFF316 are separated by 574 nucleotides
GFF314 - Mobile element protein, at 335,114 to 338,158
GFF314
GFF315 - cointegrate resolution protein S, at 338,369 to 339,691
GFF315
GFF316 - Mercuric resistance operon regulatory protein, at 340,266 to 340,676
GFF316
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 337.422 kb on - strand, within GFF314 at 337.709 kb on + strand, within GFF314 at 337.710 kb on - strand, within GFF314 at 337.733 kb on + strand, within GFF314 at 337.900 kb on - strand at 338.157 kb on - strand at 338.249 kb on + strand at 338.356 kb on - strand at 338.357 kb on - strand at 338.445 kb on + strand at 338.446 kb on - strand at 338.518 kb on - strand, within GFF315 at 338.656 kb on + strand, within GFF315 at 338.657 kb on - strand, within GFF315 at 338.812 kb on - strand, within GFF315 at 338.847 kb on + strand, within GFF315 at 338.926 kb on - strand, within GFF315 at 339.171 kb on + strand, within GFF315 at 339.172 kb on - strand, within GFF315 at 339.172 kb on - strand, within GFF315 at 339.266 kb on + strand, within GFF315 at 339.267 kb on - strand, within GFF315 at 339.539 kb on - strand, within GFF315 at 339.539 kb on - strand, within GFF315 at 339.583 kb on + strand at 339.633 kb on + strand at 339.633 kb on + strand at 339.633 kb on + strand at 339.634 kb on - strand at 339.692 kb on - strand at 339.693 kb on + strand at 339.693 kb on + strand at 339.694 kb on - strand at 339.746 kb on - strand at 339.768 kb on + strand at 339.774 kb on + strand at 339.775 kb on - strand at 339.786 kb on + strand at 339.787 kb on - strand at 339.787 kb on - strand at 339.787 kb on - strand at 339.800 kb on + strand at 339.816 kb on + strand at 339.816 kb on + strand at 339.817 kb on - strand at 339.904 kb on - strand at 339.932 kb on + strand at 339.932 kb on + strand at 339.948 kb on + strand at 340.024 kb on - strand at 340.133 kb on + strand at 340.146 kb on - strand at 340.146 kb on - strand at 340.146 kb on - strand at 340.164 kb on + strand at 340.183 kb on + strand at 340.183 kb on + strand at 340.184 kb on - strand at 340.184 kb on - strand at 340.184 kb on - strand at 340.184 kb on - strand at 340.191 kb on + strand at 340.199 kb on + strand at 340.199 kb on + strand at 340.201 kb on - strand at 340.228 kb on + strand at 340.228 kb on + strand at 340.241 kb on + strand at 340.267 kb on + strand at 340.267 kb on + strand at 340.268 kb on - strand at 340.549 kb on + strand, within GFF316 at 340.691 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 337,422 - GFF314 0.76 -0.7 337,709 + GFF314 0.85 -1.0 337,710 - GFF314 0.85 +0.3 337,733 + GFF314 0.86 -0.2 337,900 - +0.1 338,157 - -1.0 338,249 + +0.0 338,356 - +1.1 338,357 - +0.1 338,445 + -0.4 338,446 - -0.2 338,518 - GFF315 0.11 -0.1 338,656 + GFF315 0.22 +0.4 338,657 - GFF315 0.22 +3.1 338,812 - GFF315 0.33 -0.2 338,847 + GFF315 0.36 +1.5 338,926 - GFF315 0.42 +0.8 339,171 + GFF315 0.61 +0.2 339,172 - GFF315 0.61 +0.8 339,172 - GFF315 0.61 +0.3 339,266 + GFF315 0.68 +0.6 339,267 - GFF315 0.68 -1.1 339,539 - GFF315 0.88 +0.6 339,539 - GFF315 0.88 +0.9 339,583 + +0.1 339,633 + -0.3 339,633 + -0.9 339,633 + -0.3 339,634 - -0.3 339,692 - +0.0 339,693 + -0.1 339,693 + -0.6 339,694 - -0.4 339,746 - +0.1 339,768 + +1.3 339,774 + -0.0 339,775 - -0.7 339,786 + -0.1 339,787 - +0.2 339,787 - +0.0 339,787 - -0.4 339,800 + -1.9 339,816 + +0.1 339,816 + +0.0 339,817 - -0.2 339,904 - +0.4 339,932 + +1.3 339,932 + -1.3 339,948 + -0.3 340,024 - -0.9 340,133 + -0.3 340,146 - -0.2 340,146 - -1.0 340,146 - -0.6 340,164 + +0.3 340,183 + +0.1 340,183 + +0.2 340,184 - -0.7 340,184 - +1.1 340,184 - +0.4 340,184 - -1.2 340,191 + -1.9 340,199 + +1.3 340,199 + +0.3 340,201 - -0.7 340,228 + +1.3 340,228 + -0.1 340,241 + -1.2 340,267 + -0.6 340,267 + -0.7 340,268 - -0.1 340,549 + GFF316 0.69 +0.7 340,691 - +0.3
Or see this region's nucleotide sequence