Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
GFF305 - hypothetical protein, at 324,347 to 325,294
GFF305
Position (kb) 324
325
326 Strain fitness (log2 ratio) -2
-1
0
1
2 at 323.481 kb on + strand at 323.482 kb on - strand at 323.511 kb on - strand at 323.563 kb on + strand at 323.563 kb on + strand at 323.563 kb on + strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.564 kb on - strand at 323.571 kb on - strand at 323.604 kb on - strand at 323.604 kb on - strand at 323.618 kb on + strand at 323.619 kb on - strand at 323.619 kb on - strand at 323.619 kb on - strand at 323.619 kb on - strand at 323.629 kb on + strand at 323.629 kb on + strand at 323.629 kb on + strand at 323.629 kb on + strand at 323.630 kb on - strand at 323.630 kb on - strand at 323.630 kb on - strand at 323.657 kb on + strand at 323.657 kb on + strand at 323.657 kb on + strand at 323.708 kb on - strand at 323.709 kb on - strand at 323.721 kb on + strand at 323.721 kb on + strand at 323.721 kb on + strand at 323.721 kb on + strand at 323.722 kb on - strand at 323.722 kb on - strand at 323.722 kb on - strand at 323.754 kb on + strand at 323.754 kb on + strand at 323.755 kb on - strand at 323.755 kb on - strand at 323.772 kb on + strand at 323.772 kb on + strand at 323.772 kb on + strand at 323.772 kb on + strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.773 kb on - strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.909 kb on + strand at 323.910 kb on + strand at 323.910 kb on - strand at 323.910 kb on - strand at 323.910 kb on - strand at 323.910 kb on - strand at 323.929 kb on + strand at 323.929 kb on + strand at 323.929 kb on + strand at 323.929 kb on + strand at 323.929 kb on + strand at 323.929 kb on + strand at 323.929 kb on + strand at 323.930 kb on - strand at 323.930 kb on - strand at 323.930 kb on - strand at 323.930 kb on - strand at 323.930 kb on - strand at 323.935 kb on - strand at 323.935 kb on - strand at 324.042 kb on - strand at 324.042 kb on - strand at 324.042 kb on - strand at 324.042 kb on - strand at 324.042 kb on - strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.074 kb on + strand at 324.075 kb on - strand at 324.075 kb on - strand at 324.075 kb on - strand at 324.075 kb on - strand at 324.075 kb on - strand at 324.076 kb on - strand at 324.169 kb on + strand at 324.169 kb on + strand at 324.169 kb on + strand at 324.169 kb on + strand at 324.169 kb on + strand at 324.169 kb on + strand at 324.169 kb on + strand at 324.169 kb on + strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.170 kb on - strand at 324.172 kb on + strand at 324.172 kb on + strand at 324.172 kb on + strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.175 kb on + strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.176 kb on - strand at 324.194 kb on + strand at 324.195 kb on - strand at 324.195 kb on - strand at 324.196 kb on + strand at 324.196 kb on + strand at 324.197 kb on - strand at 324.207 kb on + strand at 324.207 kb on + strand at 324.208 kb on - strand at 324.223 kb on - strand at 324.231 kb on + strand at 324.231 kb on + strand at 324.231 kb on + strand at 324.231 kb on + strand at 324.231 kb on + strand at 324.232 kb on - strand at 324.232 kb on - strand at 324.232 kb on - strand at 324.232 kb on - strand at 324.333 kb on + strand at 324.333 kb on + strand at 324.353 kb on + strand at 324.353 kb on + strand at 324.353 kb on + strand at 324.354 kb on - strand at 324.354 kb on - strand at 324.608 kb on + strand, within GFF305 at 324.622 kb on - strand, within GFF305 at 324.628 kb on - strand, within GFF305 at 324.646 kb on + strand, within GFF305 at 324.647 kb on - strand, within GFF305 at 324.647 kb on - strand, within GFF305 at 324.647 kb on - strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.668 kb on + strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.669 kb on - strand, within GFF305 at 324.698 kb on + strand, within GFF305 at 324.698 kb on + strand, within GFF305 at 324.698 kb on + strand, within GFF305 at 324.698 kb on + strand, within GFF305 at 324.698 kb on + strand, within GFF305 at 324.698 kb on + strand, within GFF305 at 324.698 kb on + strand, within GFF305 at 324.699 kb on - strand, within GFF305 at 324.699 kb on - strand, within GFF305 at 324.699 kb on - strand, within GFF305 at 324.699 kb on - strand, within GFF305 at 324.969 kb on - strand, within GFF305 at 324.969 kb on - strand, within GFF305 at 324.969 kb on - strand, within GFF305 at 325.063 kb on + strand, within GFF305 at 325.063 kb on + strand, within GFF305 at 325.063 kb on + strand, within GFF305 at 325.063 kb on + strand, within GFF305 at 325.064 kb on - strand, within GFF305 at 325.097 kb on + strand, within GFF305 at 325.097 kb on + strand, within GFF305 at 325.097 kb on + strand, within GFF305 at 325.097 kb on + strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.098 kb on - strand, within GFF305 at 325.127 kb on + strand, within GFF305 at 325.127 kb on + strand, within GFF305 at 325.127 kb on + strand, within GFF305 at 325.127 kb on + strand, within GFF305 at 325.127 kb on + strand, within GFF305 at 325.127 kb on + strand, within GFF305 at 325.127 kb on + strand, within GFF305 at 325.128 kb on - strand, within GFF305 at 325.128 kb on - strand, within GFF305 at 325.128 kb on - strand, within GFF305 at 325.128 kb on - strand, within GFF305 at 325.128 kb on - strand, within GFF305 at 325.128 kb on - strand, within GFF305 at 325.128 kb on - strand, within GFF305 at 325.381 kb on + strand at 325.381 kb on + strand at 325.381 kb on + strand at 325.381 kb on + strand at 325.382 kb on - strand at 325.382 kb on - strand at 325.390 kb on + strand at 325.390 kb on + strand at 325.390 kb on + strand at 325.391 kb on - strand at 325.391 kb on - strand at 325.391 kb on - strand at 325.391 kb on - strand at 325.391 kb on - strand at 325.391 kb on - strand at 325.391 kb on - strand at 325.391 kb on - strand at 325.477 kb on + strand at 325.477 kb on + strand at 325.478 kb on - strand at 325.478 kb on - strand at 325.478 kb on - strand at 325.489 kb on + strand at 325.489 kb on + strand at 325.490 kb on - strand at 325.490 kb on - strand at 325.490 kb on - strand at 325.490 kb on - strand at 325.490 kb on - strand at 325.490 kb on - strand at 325.490 kb on - strand at 325.577 kb on + strand at 325.577 kb on + strand at 325.578 kb on - strand at 325.578 kb on - strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.828 kb on + strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.829 kb on - strand at 325.832 kb on + strand at 325.832 kb on + strand at 325.832 kb on + strand at 325.832 kb on + strand at 325.832 kb on + strand at 325.832 kb on + strand at 325.833 kb on - strand at 325.833 kb on - strand at 325.833 kb on - strand at 325.833 kb on - strand at 325.940 kb on + strand at 325.941 kb on - strand at 325.941 kb on - strand at 325.941 kb on - strand at 325.941 kb on - strand at 326.016 kb on + strand at 326.016 kb on + strand at 326.016 kb on + strand at 326.017 kb on - strand at 326.017 kb on - strand at 326.079 kb on - strand at 326.117 kb on + strand at 326.117 kb on + strand at 326.117 kb on + strand at 326.117 kb on + strand at 326.117 kb on + strand at 326.118 kb on - strand at 326.118 kb on - strand at 326.118 kb on - strand at 326.118 kb on - strand at 326.272 kb on + strand at 326.272 kb on + strand at 326.272 kb on + strand at 326.273 kb on - strand at 326.273 kb on - strand at 326.273 kb on - strand at 326.273 kb on - strand at 326.273 kb on - strand at 326.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 323,481 + +0.3 323,482 - -0.1 323,511 - +0.4 323,563 + +0.0 323,563 + -1.9 323,563 + +1.3 323,564 - -0.9 323,564 - +0.1 323,564 - +0.2 323,564 - -0.0 323,564 - -0.3 323,571 - +0.3 323,604 - +0.4 323,604 - -0.9 323,618 + +0.4 323,619 - -1.3 323,619 - -0.3 323,619 - +0.3 323,619 - -0.2 323,629 + -0.0 323,629 + -0.7 323,629 + +0.6 323,629 + -0.3 323,630 - +0.6 323,630 - -0.1 323,630 - +0.6 323,657 + +0.3 323,657 + +1.7 323,657 + -0.2 323,708 - +0.3 323,709 - +0.3 323,721 + -0.1 323,721 + -1.3 323,721 + +0.7 323,721 + -0.4 323,722 - -0.0 323,722 - -0.2 323,722 - -0.2 323,754 + -0.2 323,754 + +0.3 323,755 - +2.3 323,755 - -0.1 323,772 + -0.8 323,772 + +0.5 323,772 + +0.2 323,772 + +0.4 323,773 - +0.2 323,773 - -0.4 323,773 - +1.3 323,773 - -0.7 323,773 - -0.2 323,773 - -0.7 323,773 - +0.5 323,773 - +0.1 323,773 - +0.8 323,773 - +0.7 323,773 - -0.5 323,909 + -0.3 323,909 + -0.2 323,909 + +0.4 323,909 + -0.4 323,909 + +1.3 323,909 + -0.1 323,909 + -1.3 323,909 + +0.0 323,909 + +0.3 323,909 + -0.9 323,910 + -0.4 323,910 - +0.7 323,910 - +0.7 323,910 - +0.5 323,910 - +0.4 323,929 + -0.0 323,929 + +0.2 323,929 + +1.3 323,929 + +0.6 323,929 + +0.4 323,929 + -0.3 323,929 + +0.8 323,930 - +0.0 323,930 - -2.1 323,930 - +0.4 323,930 - -0.2 323,930 - -1.0 323,935 - +0.7 323,935 - -0.3 324,042 - +1.3 324,042 - -0.9 324,042 - -0.2 324,042 - +0.4 324,042 - +0.1 324,074 + -0.0 324,074 + -0.1 324,074 + -0.1 324,074 + +0.3 324,074 + -1.5 324,074 + +0.9 324,074 + -1.7 324,074 + -1.2 324,074 + -0.7 324,074 + -1.1 324,074 + -0.5 324,074 + -0.6 324,074 + +0.5 324,074 + +0.1 324,075 - -1.1 324,075 - -0.2 324,075 - +0.8 324,075 - +0.3 324,075 - +1.3 324,076 - -0.3 324,169 + -0.9 324,169 + -0.5 324,169 + +0.5 324,169 + -1.0 324,169 + +0.3 324,169 + +0.2 324,169 + +1.3 324,169 + -0.4 324,170 - +0.6 324,170 - -1.4 324,170 - -0.1 324,170 - -0.6 324,170 - +0.0 324,170 - -0.5 324,170 - -0.5 324,170 - +0.7 324,170 - -0.5 324,170 - -0.4 324,170 - -2.3 324,170 - -1.1 324,170 - -1.0 324,170 - -0.1 324,172 + +0.0 324,172 + +0.3 324,172 + +0.3 324,173 - -0.3 324,173 - -1.5 324,173 - -0.8 324,173 - +0.6 324,173 - +0.4 324,173 - -0.8 324,173 - -0.4 324,173 - -0.8 324,173 - +0.1 324,173 - +0.8 324,175 + -0.8 324,175 + -1.1 324,175 + -0.0 324,175 + -0.5 324,175 + +0.5 324,175 + -0.0 324,175 + -0.2 324,175 + -0.1 324,175 + +0.8 324,176 - -0.4 324,176 - +0.5 324,176 - -0.0 324,176 - -0.2 324,176 - +0.8 324,176 - -0.3 324,176 - +1.1 324,176 - -1.3 324,176 - +0.2 324,176 - +0.1 324,194 + +0.3 324,195 - +0.1 324,195 - +0.3 324,196 + +1.1 324,196 + -0.2 324,197 - -0.3 324,207 + +0.3 324,207 + -0.2 324,208 - +0.8 324,223 - +0.1 324,231 + +0.2 324,231 + +0.5 324,231 + -0.1 324,231 + +1.3 324,231 + +0.3 324,232 - -0.5 324,232 - +0.3 324,232 - +0.0 324,232 - -0.7 324,333 + -0.2 324,333 + +0.3 324,353 + -0.8 324,353 + -0.0 324,353 + +1.3 324,354 - +0.0 324,354 - -1.1 324,608 + GFF305 0.28 +0.3 324,622 - GFF305 0.29 -1.1 324,628 - GFF305 0.30 -1.8 324,646 + GFF305 0.32 -1.5 324,647 - GFF305 0.32 -0.1 324,647 - GFF305 0.32 -1.1 324,647 - GFF305 0.32 -0.1 324,668 + GFF305 0.34 -0.5 324,668 + GFF305 0.34 +0.5 324,668 + GFF305 0.34 +0.5 324,668 + GFF305 0.34 +0.3 324,668 + GFF305 0.34 +0.7 324,668 + GFF305 0.34 +0.8 324,668 + GFF305 0.34 +1.3 324,668 + GFF305 0.34 -0.9 324,669 - GFF305 0.34 -2.1 324,669 - GFF305 0.34 +1.0 324,669 - GFF305 0.34 -0.6 324,669 - GFF305 0.34 -0.2 324,669 - GFF305 0.34 +0.4 324,669 - GFF305 0.34 -0.2 324,669 - GFF305 0.34 -0.2 324,669 - GFF305 0.34 -1.3 324,669 - GFF305 0.34 +0.5 324,669 - GFF305 0.34 -0.8 324,698 + GFF305 0.37 +0.3 324,698 + GFF305 0.37 -0.1 324,698 + GFF305 0.37 +1.3 324,698 + GFF305 0.37 -0.2 324,698 + GFF305 0.37 +0.5 324,698 + GFF305 0.37 +0.3 324,698 + GFF305 0.37 +1.3 324,699 - GFF305 0.37 -0.0 324,699 - GFF305 0.37 -0.2 324,699 - GFF305 0.37 -0.0 324,699 - GFF305 0.37 -1.5 324,969 - GFF305 0.66 -0.2 324,969 - GFF305 0.66 +1.0 324,969 - GFF305 0.66 -0.6 325,063 + GFF305 0.76 -0.7 325,063 + GFF305 0.76 -0.6 325,063 + GFF305 0.76 +0.3 325,063 + GFF305 0.76 -0.0 325,064 - GFF305 0.76 +0.4 325,097 + GFF305 0.79 +0.5 325,097 + GFF305 0.79 -0.3 325,097 + GFF305 0.79 -0.5 325,097 + GFF305 0.79 +0.3 325,098 - GFF305 0.79 +0.3 325,098 - GFF305 0.79 -0.2 325,098 - GFF305 0.79 +0.3 325,098 - GFF305 0.79 +1.3 325,098 - GFF305 0.79 -1.0 325,098 - GFF305 0.79 +0.5 325,098 - GFF305 0.79 -0.3 325,098 - GFF305 0.79 -1.4 325,098 - GFF305 0.79 -0.7 325,098 - GFF305 0.79 +1.3 325,127 + GFF305 0.82 -0.4 325,127 + GFF305 0.82 -0.1 325,127 + GFF305 0.82 -0.7 325,127 + GFF305 0.82 -0.5 325,127 + GFF305 0.82 -0.0 325,127 + GFF305 0.82 +1.3 325,127 + GFF305 0.82 -1.3 325,128 - GFF305 0.82 +0.8 325,128 - GFF305 0.82 +0.3 325,128 - GFF305 0.82 +0.3 325,128 - GFF305 0.82 -0.7 325,128 - GFF305 0.82 +0.5 325,128 - GFF305 0.82 +1.0 325,128 - GFF305 0.82 -1.4 325,381 + -0.1 325,381 + -0.0 325,381 + -0.7 325,381 + +0.3 325,382 - +0.0 325,382 - +0.7 325,390 + -1.1 325,390 + +0.9 325,390 + +2.3 325,391 - -0.1 325,391 - -0.2 325,391 - -0.3 325,391 - -0.5 325,391 - -0.2 325,391 - +0.8 325,391 - +0.1 325,391 - -1.1 325,477 + -1.3 325,477 + -0.7 325,478 - +0.8 325,478 - -0.4 325,478 - +0.1 325,489 + +1.3 325,489 + -0.2 325,490 - -0.5 325,490 - -0.0 325,490 - -0.3 325,490 - +0.5 325,490 - +0.4 325,490 - +1.3 325,490 - -0.0 325,577 + +0.3 325,577 + -1.1 325,578 - +0.5 325,578 - +0.0 325,828 + -0.7 325,828 + -1.6 325,828 + -0.5 325,828 + -0.1 325,828 + +0.3 325,828 + +0.5 325,828 + -0.7 325,828 + -0.2 325,828 + +0.3 325,828 + -0.4 325,828 + +0.7 325,828 + +0.3 325,828 + -2.3 325,828 + +0.4 325,828 + -0.5 325,829 - +0.1 325,829 - -0.2 325,829 - +1.6 325,829 - -0.2 325,829 - -0.2 325,829 - -0.1 325,829 - +1.1 325,829 - -0.1 325,829 - -0.7 325,829 - -0.2 325,829 - +0.2 325,829 - +0.8 325,829 - -0.4 325,829 - -0.7 325,829 - -0.0 325,829 - +1.3 325,829 - +0.3 325,829 - +0.4 325,829 - -0.9 325,829 - +0.1 325,829 - -0.5 325,829 - +0.4 325,829 - +0.6 325,832 + -0.9 325,832 + +0.8 325,832 + -0.0 325,832 + +0.0 325,832 + -0.2 325,832 + +0.6 325,833 - -1.5 325,833 - -0.8 325,833 - +0.9 325,833 - +1.0 325,940 + +0.1 325,941 - +0.4 325,941 - -1.5 325,941 - -0.0 325,941 - -0.4 326,016 + -1.3 326,016 + +0.7 326,016 + -0.8 326,017 - +0.5 326,017 - +0.1 326,079 - -0.8 326,117 + -0.1 326,117 + -0.9 326,117 + -0.9 326,117 + -0.2 326,117 + +0.5 326,118 - -0.3 326,118 - +0.7 326,118 - -0.9 326,118 - +1.5 326,272 + -0.0 326,272 + -0.1 326,272 + -0.2 326,273 - -0.4 326,273 - +2.5 326,273 - -0.7 326,273 - -0.4 326,273 - +0.3 326,273 - -0.5
Or see this region's nucleotide sequence