Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2972 and GFF2973 are separated by 18 nucleotides GFF2973 and GFF2974 overlap by 4 nucleotides GFF2974 and GFF2975 are separated by 28 nucleotides GFF2975 and GFF2976 overlap by 4 nucleotides
GFF2972 - TRAP-type C4-dicarboxylate transport system, large permease component, at 50,362 to 51,633
GFF2972
GFF2973 - TRAP-type C4-dicarboxylate transport system, small permease component, at 51,652 to 52,158
GFF2973
GFF2974 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 52,155 to 53,147
GFF2974
GFF2975 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 53,176 to 54,009
GFF2975
GFF2976 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 54,006 to 55,058
GFF2976
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1 at 51.227 kb on + strand, within GFF2972 at 51.227 kb on + strand, within GFF2972 at 51.228 kb on - strand, within GFF2972 at 51.228 kb on - strand, within GFF2972 at 51.753 kb on - strand, within GFF2973 at 52.219 kb on + strand at 52.439 kb on - strand, within GFF2974 at 52.439 kb on - strand, within GFF2974 at 52.463 kb on - strand, within GFF2974 at 52.477 kb on + strand, within GFF2974 at 52.478 kb on - strand, within GFF2974 at 53.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 51,227 + GFF2972 0.68 +1.4 51,227 + GFF2972 0.68 -1.4 51,228 - GFF2972 0.68 +0.3 51,228 - GFF2972 0.68 +0.7 51,753 - GFF2973 0.20 +0.3 52,219 + -0.2 52,439 - GFF2974 0.29 +1.6 52,439 - GFF2974 0.29 +1.4 52,463 - GFF2974 0.31 +1.0 52,477 + GFF2974 0.32 +0.8 52,478 - GFF2974 0.33 +0.5 53,931 - +0.5
Or see this region's nucleotide sequence