Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2961 and GFF2962 overlap by 4 nucleotides GFF2962 and GFF2963 are separated by 16 nucleotides GFF2963 and GFF2964 overlap by 4 nucleotides
GFF2961 - putative exported protein, at 40,019 to 40,996
GFF2961
GFF2962 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 40,993 to 41,898
GFF2962
GFF2963 - Dimethylmenaquinone methyltransferase family protein, at 41,915 to 42,625
GFF2963
GFF2964 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 42,622 to 43,632
GFF2964
GFF2965 - Tricarboxylate transport protein TctC, at 43,609 to 44,571
GFF2965
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.270 kb on - strand, within GFF2962 at 41.270 kb on - strand, within GFF2962 at 41.389 kb on + strand, within GFF2962 at 41.425 kb on + strand, within GFF2962 at 41.425 kb on + strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.426 kb on - strand, within GFF2962 at 41.641 kb on + strand, within GFF2962 at 41.642 kb on - strand, within GFF2962 at 41.746 kb on + strand, within GFF2962 at 41.878 kb on + strand at 41.879 kb on - strand at 42.227 kb on + strand, within GFF2963 at 42.227 kb on + strand, within GFF2963 at 42.228 kb on - strand, within GFF2963 at 42.228 kb on - strand, within GFF2963 at 43.058 kb on - strand, within GFF2964
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 41,270 - GFF2962 0.31 +0.7 41,270 - GFF2962 0.31 +0.5 41,389 + GFF2962 0.44 +0.5 41,425 + GFF2962 0.48 +0.1 41,425 + GFF2962 0.48 -0.2 41,426 - GFF2962 0.48 -1.2 41,426 - GFF2962 0.48 +0.5 41,426 - GFF2962 0.48 -0.2 41,641 + GFF2962 0.72 +0.3 41,642 - GFF2962 0.72 -1.2 41,746 + GFF2962 0.83 +0.4 41,878 + +0.4 41,879 - -1.8 42,227 + GFF2963 0.44 +0.1 42,227 + GFF2963 0.44 -0.8 42,228 - GFF2963 0.44 +2.2 42,228 - GFF2963 0.44 +1.4 43,058 - GFF2964 0.43 -0.2
Or see this region's nucleotide sequence