Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2953

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
31,174	+				+0.7
31,175	-				-0.3
31,175	-				-0.6
31,310	+		GFF2952	0.16	-0.4
31,310	+		GFF2952	0.16	-0.4
31,310	+		GFF2952	0.16	+1.3
31,310	+		GFF2952	0.16	+0.2
31,310	+		GFF2952	0.16	-0.0
31,311	-		GFF2952	0.16	-0.4
31,311	-		GFF2952	0.16	+1.1
31,311	-		GFF2952	0.16	+0.6
31,311	-		GFF2952	0.16	-0.5
31,311	-		GFF2952	0.16	-0.2
31,311	-		GFF2952	0.16	-0.6
31,394	-		GFF2952	0.24	-0.3
31,394	-		GFF2952	0.24	-0.2
31,394	-		GFF2952	0.24	+1.4
31,438	+		GFF2952	0.29	-0.7
31,438	-		GFF2952	0.29	-0.0
31,495	+		GFF2952	0.34	+0.3
31,495	+		GFF2952	0.34	+0.9
31,496	-		GFF2952	0.34	-0.5
31,496	-		GFF2952	0.34	-0.4
31,732	+		GFF2952	0.58	+0.3
31,732	+		GFF2952	0.58	+0.6
31,732	+		GFF2952	0.58	+0.6
31,732	+		GFF2952	0.58	-0.5
31,732	+		GFF2952	0.58	-0.2
31,733	-		GFF2952	0.58	+0.1
31,733	-		GFF2952	0.58	-0.1
31,733	-		GFF2952	0.58	-0.0
31,733	-		GFF2952	0.58	-0.0
31,733	-		GFF2952	0.58	+0.6
31,837	+		GFF2952	0.68	-1.3
31,837	+		GFF2952	0.68	-0.3
31,837	+		GFF2952	0.68	-0.2
31,837	+		GFF2952	0.68	+0.7
31,838	-		GFF2952	0.69	-0.2
31,838	-		GFF2952	0.69	+0.1
31,838	-		GFF2952	0.69	-0.0
31,894	+		GFF2952	0.74	+0.2
31,894	+		GFF2952	0.74	-0.0
31,894	+		GFF2952	0.74	-1.0
31,895	-		GFF2952	0.74	-0.4
31,895	-		GFF2952	0.74	+0.5
32,217	+		GFF2953	0.10	-0.1
32,217	+		GFF2953	0.10	-0.5
32,218	-		GFF2953	0.10	+0.2
32,253	+		GFF2953	0.17	+0.4
32,253	+		GFF2953	0.17	-0.2
32,253	+		GFF2953	0.17	+0.1
32,253	+		GFF2953	0.17	-1.0
32,253	+		GFF2953	0.17	+0.7
32,253	+		GFF2953	0.17	-0.8
32,253	+		GFF2953	0.17	-0.8
32,254	-		GFF2953	0.17	-0.4
32,254	-		GFF2953	0.17	-0.8
32,254	-		GFF2953	0.17	-0.3
32,254	-		GFF2953	0.17	+0.8
32,254	-		GFF2953	0.17	-0.6
32,254	-		GFF2953	0.17	+0.1
32,254	-		GFF2953	0.17	-0.1
32,352	+		GFF2953	0.36	-0.1
32,352	+		GFF2953	0.36	-0.6
32,352	+		GFF2953	0.36	-0.6
32,352	+		GFF2953	0.36	+1.4
32,352	+		GFF2953	0.36	-0.2
32,353	-		GFF2953	0.36	-1.4
32,353	-		GFF2953	0.36	+0.5
32,353	-		GFF2953	0.36	-1.0
32,353	-		GFF2953	0.36	-1.3
32,379	+		GFF2953	0.41	+1.6
32,379	+		GFF2953	0.41	-0.6
32,380	-		GFF2953	0.41	-2.0
32,380	-		GFF2953	0.41	-0.6
32,380	-		GFF2953	0.41	-0.5
32,380	-		GFF2953	0.41	-1.2
32,406	+		GFF2953	0.46	-1.2
32,406	+		GFF2953	0.46	+0.2
32,406	+		GFF2953	0.46	+1.8
32,406	+		GFF2953	0.46	+0.6
32,406	+		GFF2953	0.46	-0.2
32,406	+		GFF2953	0.46	-0.2
32,407	-		GFF2953	0.46	-0.1
32,407	-		GFF2953	0.46	-0.0
32,407	-		GFF2953	0.46	-0.4
32,407	-		GFF2953	0.46	+0.6
32,407	-		GFF2953	0.46	-0.5
32,407	-		GFF2953	0.46	-0.5
32,407	-		GFF2953	0.46	-1.3
32,407	-		GFF2953	0.46	+0.8
32,526	+		GFF2953	0.69	-1.0
32,526	+		GFF2953	0.69	-0.8
32,527	-		GFF2953	0.69	-0.5
32,527	-		GFF2953	0.69	-0.5
32,527	-		GFF2953	0.69	-0.6
32,527	-		GFF2953	0.69	-0.6
32,527	-		GFF2953	0.69	-0.4
32,759	+				-0.6
32,759	+				+1.4
32,759	+				-0.2
32,759	+				+0.0
32,759	+				+0.4
32,759	+				+0.4
32,759	+				+0.0
32,760	-				+0.6
32,760	-				-1.4
32,760	-				-1.5
32,780	+				+0.8
32,780	+				+0.6
32,780	+				-0.5
32,780	+				+1.9
32,780	+				+0.4
32,780	+				-0.5
32,780	+				+0.9
32,780	+				-0.0
32,780	+				+0.1
32,781	-				-1.7
32,781	-				-1.2
32,781	-				-1.2
32,781	-				+0.2
32,781	-				-0.1
32,781	-				+0.4
32,781	-				-1.2
32,781	-				+0.3
32,781	-				+0.4
32,781	-				+0.7
32,975	+		GFF2954	0.25	+0.1
32,975	+		GFF2954	0.25	+0.5
32,975	+		GFF2954	0.25	-1.9
32,975	+		GFF2954	0.25	-0.5
32,975	+		GFF2954	0.25	-0.4
32,976	-		GFF2954	0.25	-1.9
32,976	-		GFF2954	0.25	-0.3
33,273	-		GFF2954	0.60	+0.6
33,273	-		GFF2954	0.60	-0.3
33,368	+		GFF2954	0.71	-0.9
33,368	+		GFF2954	0.71	+0.2
33,368	+		GFF2954	0.71	-0.6
33,368	+		GFF2954	0.71	-0.4
33,369	-		GFF2954	0.71	-0.8
33,369	-		GFF2954	0.71	-1.2
33,369	-		GFF2954	0.71	-0.0
33,369	-		GFF2954	0.71	-2.8
33,369	-		GFF2954	0.71	-1.0
33,369	-		GFF2954	0.71	-0.5
33,500	+		GFF2954	0.86	+0.8
33,500	+		GFF2954	0.86	+0.1
33,500	+		GFF2954	0.86	-0.2
33,500	+		GFF2954	0.86	-0.4
33,500	+		GFF2954	0.86	-0.2
33,500	+		GFF2954	0.86	+0.6
33,500	+		GFF2954	0.86	-0.8
33,500	+		GFF2954	0.86	+0.5
33,500	+		GFF2954	0.86	-1.2
33,500	+		GFF2954	0.86	-1.0
33,501	-		GFF2954	0.86	-0.6
33,501	-		GFF2954	0.86	-0.0
33,501	-		GFF2954	0.86	+0.1
33,501	-		GFF2954	0.86	-0.1
33,501	-		GFF2954	0.86	-2.5
33,501	-		GFF2954	0.86	-0.9
33,501	-		GFF2954	0.86	-1.3
33,501	-		GFF2954	0.86	+0.5
33,501	-		GFF2954	0.86	+1.9
33,501	-		GFF2954	0.86	-0.4
33,501	-		GFF2954	0.86	-2.1
33,501	-		GFF2954	0.86	-0.0
33,501	-		GFF2954	0.86	-0.5
33,501	-		GFF2954	0.86	+0.6
33,501	-		GFF2954	0.86	-2.0
33,501	-		GFF2954	0.86	-1.0
33,501	-		GFF2954	0.86	-1.3
33,503	+		GFF2954	0.86	-1.0
33,503	+		GFF2954	0.86	-1.7
33,503	+		GFF2954	0.86	-0.8
33,503	+		GFF2954	0.86	-0.1
33,503	+		GFF2954	0.86	-0.1
33,503	+		GFF2954	0.86	-0.4
33,503	+		GFF2954	0.86	-1.6
33,504	-		GFF2954	0.86	-0.4
33,504	-		GFF2954	0.86	-0.9
33,504	-		GFF2954	0.86	-1.2
33,504	-		GFF2954	0.86	-1.1
33,504	-		GFF2954	0.86	+0.5
33,504	-		GFF2954	0.86	-0.3
33,504	-		GFF2954	0.86	-0.4
33,504	-		GFF2954	0.86	+0.5
33,504	-		GFF2954	0.86	+0.0
33,591	+				+0.7
33,592	-				+0.1
33,592	-				-1.6