Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2936

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2934 and GFF2935 are separated by 28 nucleotidesGFF2935 and GFF2936 are separated by 85 nucleotidesGFF2936 and GFF2937 are separated by 19 nucleotides GFF2934 - Lipoate synthase, at 17,328 to 18,344 GFF2934 GFF2935 - Octanoate-[acyl-carrier-protein]-protein-N-octan oyltransferase, at 18,373 to 19,065 GFF2935 GFF2936 - Proposed lipoate regulatory protein YbeD, at 19,151 to 19,435 GFF2936 GFF2937 - D-alanine aminotransferase (EC 2.6.1.21), at 19,455 to 20,339 GFF2937 Position (kb) 19 20Strain fitness (log2 ratio) -2 -1 0 1 2at 19.251 kb on + strand, within GFF2936at 19.251 kb on + strand, within GFF2936at 19.251 kb on + strand, within GFF2936at 19.252 kb on - strand, within GFF2936at 19.390 kb on - strand, within GFF2936at 19.460 kb on + strandat 19.487 kb on - strandat 19.495 kb on + strandat 19.495 kb on + strandat 19.495 kb on + strandat 19.496 kb on - strandat 19.496 kb on - strandat 19.507 kb on + strandat 19.508 kb on - strandat 19.508 kb on - strandat 19.654 kb on + strand, within GFF2937at 19.655 kb on - strand, within GFF2937at 19.655 kb on - strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.050 kb on + strand, within GFF2937at 20.051 kb on - strand, within GFF2937at 20.051 kb on - strand, within GFF2937at 20.051 kb on - strand, within GFF2937at 20.051 kb on - strand, within GFF2937at 20.212 kb on + strand, within GFF2937at 20.213 kb on - strand, within GFF2937at 20.213 kb on - strand, within GFF2937at 20.213 kb on - strand, within GFF2937at 20.213 kb on - strand, within GFF2937at 20.213 kb on - strand, within GFF2937at 20.213 kb on - strand, within GFF2937at 20.230 kb on + strand, within GFF2937at 20.231 kb on - strand, within GFF2937at 20.296 kb on + strandat 20.296 kb on + strandat 20.296 kb on + strandat 20.296 kb on + strandat 20.297 kb on - strandat 20.297 kb on - strandat 20.297 kb on - strandat 20.297 kb on - strandat 20.297 kb on - strandat 20.297 kb on - strandat 20.348 kb on + strandat 20.402 kb on - strandat 20.424 kb on + strandat 20.424 kb on + strandat 20.424 kb on + strandat 20.424 kb on + strandat 20.424 kb on + strandat 20.424 kb on + strandat 20.425 kb on - strandat 20.425 kb on - strandat 20.425 kb on - strandat 20.425 kb on - strandat 20.425 kb on - strandat 20.425 kb on - strandat 20.425 kb on - strandat 20.428 kb on + strandat 20.428 kb on + strandat 20.428 kb on + strandat 20.428 kb on + strandat 20.428 kb on + strandat 20.429 kb on - strandat 20.429 kb on - strandat 20.429 kb on - strandat 20.429 kb on - strandat 20.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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19,251 + GFF2936 0.35 +0.1
19,251 + GFF2936 0.35 -0.5
19,251 + GFF2936 0.35 -1.4
19,252 - GFF2936 0.35 -1.4
19,390 - GFF2936 0.84 -1.4
19,460 + +0.4
19,487 - -0.2
19,495 + -0.2
19,495 + +0.2
19,495 + +0.6
19,496 - -1.0
19,496 - -0.9
19,507 + -0.3
19,508 - +0.4
19,508 - +1.1
19,654 + GFF2937 0.22 +0.9
19,655 - GFF2937 0.23 +0.5
19,655 - GFF2937 0.23 +0.6
20,050 + GFF2937 0.67 -0.9
20,050 + GFF2937 0.67 -0.7
20,050 + GFF2937 0.67 +1.0
20,050 + GFF2937 0.67 +0.7
20,050 + GFF2937 0.67 +0.8
20,050 + GFF2937 0.67 -0.0
20,050 + GFF2937 0.67 +1.1
20,050 + GFF2937 0.67 +2.7
20,050 + GFF2937 0.67 -0.3
20,050 + GFF2937 0.67 +0.3
20,050 + GFF2937 0.67 -1.8
20,050 + GFF2937 0.67 +0.8
20,050 + GFF2937 0.67 -0.6
20,050 + GFF2937 0.67 +0.8
20,051 - GFF2937 0.67 -0.3
20,051 - GFF2937 0.67 -0.0
20,051 - GFF2937 0.67 -0.2
20,051 - GFF2937 0.67 -1.6
20,212 + GFF2937 0.86 +0.7
20,213 - GFF2937 0.86 +0.0
20,213 - GFF2937 0.86 -0.0
20,213 - GFF2937 0.86 +0.4
20,213 - GFF2937 0.86 -1.2
20,213 - GFF2937 0.86 -0.2
20,213 - GFF2937 0.86 +0.8
20,230 + GFF2937 0.88 +1.4
20,231 - GFF2937 0.88 +0.1
20,296 + -0.2
20,296 + -0.2
20,296 + -1.3
20,296 + +0.2
20,297 - -1.3
20,297 - +1.0
20,297 - +0.7
20,297 - -0.9
20,297 - -0.3
20,297 - +0.1
20,348 + -0.8
20,402 - +1.0
20,424 + -0.2
20,424 + +0.0
20,424 + -0.4
20,424 + -0.3
20,424 + -0.1
20,424 + +0.1
20,425 - +1.2
20,425 - +0.9
20,425 - +0.3
20,425 - +0.4
20,425 - -0.4
20,425 - -0.4
20,425 - +0.6
20,428 + +0.1
20,428 + -0.0
20,428 + -0.0
20,428 + -0.6
20,428 + -1.1
20,429 - -0.4
20,429 - +1.4
20,429 - +0.4
20,429 - +0.7
20,429 - +0.9

Or see this region's nucleotide sequence