Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2854 and GFF2855 are separated by 10 nucleotides GFF2855 and GFF2856 are separated by 10 nucleotides GFF2856 and GFF2857 are separated by 21 nucleotides GFF2857 and GFF2858 are separated by 87 nucleotides
GFF2854 - Probable hydrolase, at 442,985 to 443,908
GFF2854
GFF2855 - UPF0028 protein YchK, at 443,919 to 444,806
GFF2855
GFF2856 - FIG01160152: hypothetical protein, at 444,817 to 445,761
GFF2856
GFF2857 - hypothetical protein, at 445,783 to 446,109
GFF2857
GFF2858 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 446,197 to 447,147
GFF2858
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1 at 444.941 kb on + strand, within GFF2856 at 445.042 kb on + strand, within GFF2856 at 445.042 kb on + strand, within GFF2856 at 445.043 kb on - strand, within GFF2856 at 445.043 kb on - strand, within GFF2856 at 445.378 kb on + strand, within GFF2856 at 445.378 kb on + strand, within GFF2856 at 445.379 kb on - strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.882 kb on + strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.916 kb on - strand, within GFF2857 at 446.389 kb on + strand, within GFF2858 at 446.390 kb on - strand, within GFF2858 at 446.559 kb on + strand, within GFF2858
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 444,941 + GFF2856 0.13 -0.5 445,042 + GFF2856 0.24 -0.4 445,042 + GFF2856 0.24 -1.3 445,043 - GFF2856 0.24 -0.9 445,043 - GFF2856 0.24 +0.2 445,378 + GFF2856 0.59 -0.5 445,378 + GFF2856 0.59 +0.2 445,379 - GFF2856 0.59 +0.8 445,651 + GFF2856 0.88 -1.0 445,651 + GFF2856 0.88 +0.0 445,651 + GFF2856 0.88 +0.3 445,651 + GFF2856 0.88 -0.1 445,651 + GFF2856 0.88 -0.4 445,882 + GFF2857 0.30 -0.2 445,883 - GFF2857 0.31 +1.3 445,883 - GFF2857 0.31 +0.5 445,883 - GFF2857 0.31 +0.3 445,883 - GFF2857 0.31 -2.2 445,916 - GFF2857 0.41 -0.7 446,389 + GFF2858 0.20 +0.2 446,390 - GFF2858 0.20 +0.0 446,559 + GFF2858 0.38 -1.1
Or see this region's nucleotide sequence