Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2854

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2853 and GFF2854 are separated by 118 nucleotidesGFF2854 and GFF2855 are separated by 10 nucleotidesGFF2855 and GFF2856 are separated by 10 nucleotides GFF2853 - probable two-component sensor, at 441,112 to 442,866 GFF2853 GFF2854 - Probable hydrolase, at 442,985 to 443,908 GFF2854 GFF2855 - UPF0028 protein YchK, at 443,919 to 444,806 GFF2855 GFF2856 - FIG01160152: hypothetical protein, at 444,817 to 445,761 GFF2856 Position (kb) 442 443 444Strain fitness (log2 ratio) -1 0 1at 442.865 kb on - strandat 443.105 kb on + strand, within GFF2854at 443.265 kb on - strand, within GFF2854

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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442,865 - -0.8
443,105 + GFF2854 0.13 +0.3
443,265 - GFF2854 0.30 +1.0

Or see this region's nucleotide sequence