Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2810 and GFF2811 overlap by 4 nucleotides GFF2811 and GFF2812 overlap by 8 nucleotides GFF2812 and GFF2813 are separated by 10 nucleotides GFF2813 and GFF2814 are separated by 92 nucleotides
GFF2810 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 409,217 to 410,293
GFF2810
GFF2811 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 410,290 to 411,183
GFF2811
GFF2812 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 411,176 to 411,988
GFF2812
GFF2813 - FIG00761799: membrane protein, at 411,999 to 412,307
GFF2813
GFF2814 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 412,400 to 414,133
GFF2814
Position (kb) 411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 410.267 kb on + strand at 410.267 kb on + strand at 410.298 kb on + strand at 410.298 kb on + strand at 410.298 kb on + strand at 410.298 kb on + strand at 410.298 kb on + strand at 410.299 kb on - strand at 410.299 kb on - strand at 410.299 kb on - strand at 410.299 kb on - strand at 410.385 kb on + strand, within GFF2811 at 410.399 kb on - strand, within GFF2811 at 410.695 kb on + strand, within GFF2811 at 410.722 kb on + strand, within GFF2811 at 410.723 kb on - strand, within GFF2811 at 410.723 kb on - strand, within GFF2811 at 410.729 kb on - strand, within GFF2811 at 410.842 kb on + strand, within GFF2811 at 410.843 kb on - strand, within GFF2811 at 410.843 kb on - strand, within GFF2811 at 410.843 kb on - strand, within GFF2811 at 410.845 kb on + strand, within GFF2811 at 410.845 kb on + strand, within GFF2811 at 410.846 kb on - strand, within GFF2811 at 410.968 kb on + strand, within GFF2811 at 411.094 kb on + strand at 411.095 kb on - strand at 411.130 kb on + strand at 411.131 kb on - strand at 411.131 kb on - strand at 411.131 kb on - strand at 411.181 kb on + strand at 411.181 kb on + strand at 411.182 kb on - strand at 411.222 kb on - strand at 411.248 kb on + strand at 411.249 kb on - strand at 411.249 kb on - strand at 411.335 kb on + strand, within GFF2812 at 411.374 kb on + strand, within GFF2812 at 411.374 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.392 kb on + strand, within GFF2812 at 411.393 kb on - strand, within GFF2812 at 411.551 kb on + strand, within GFF2812 at 411.551 kb on + strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.552 kb on - strand, within GFF2812 at 411.780 kb on + strand, within GFF2812 at 411.954 kb on - strand at 411.954 kb on - strand at 411.954 kb on - strand at 412.176 kb on + strand, within GFF2813 at 412.177 kb on - strand, within GFF2813 at 412.684 kb on + strand, within GFF2814 at 412.684 kb on + strand, within GFF2814 at 412.684 kb on + strand, within GFF2814 at 412.685 kb on - strand, within GFF2814 at 412.763 kb on + strand, within GFF2814 at 412.763 kb on + strand, within GFF2814 at 412.764 kb on - strand, within GFF2814 at 412.805 kb on + strand, within GFF2814 at 412.806 kb on - strand, within GFF2814 at 412.838 kb on + strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.839 kb on - strand, within GFF2814 at 412.862 kb on + strand, within GFF2814 at 412.862 kb on + strand, within GFF2814 at 412.863 kb on - strand, within GFF2814 at 412.863 kb on - strand, within GFF2814 at 412.934 kb on + strand, within GFF2814 at 412.968 kb on - strand, within GFF2814
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 410,267 + +0.1 410,267 + -0.7 410,298 + +0.9 410,298 + +0.6 410,298 + +1.6 410,298 + +0.1 410,298 + +0.3 410,299 - +0.3 410,299 - -0.2 410,299 - -0.7 410,299 - +0.0 410,385 + GFF2811 0.11 +0.0 410,399 - GFF2811 0.12 -1.2 410,695 + GFF2811 0.45 -0.3 410,722 + GFF2811 0.48 -0.1 410,723 - GFF2811 0.48 +0.0 410,723 - GFF2811 0.48 -0.4 410,729 - GFF2811 0.49 +0.7 410,842 + GFF2811 0.62 +0.6 410,843 - GFF2811 0.62 -1.9 410,843 - GFF2811 0.62 -0.3 410,843 - GFF2811 0.62 -0.4 410,845 + GFF2811 0.62 -0.5 410,845 + GFF2811 0.62 -0.1 410,846 - GFF2811 0.62 +0.0 410,968 + GFF2811 0.76 -0.9 411,094 + -0.8 411,095 - +0.7 411,130 + -0.7 411,131 - -0.0 411,131 - +1.3 411,131 - -0.4 411,181 + -0.1 411,181 + +0.7 411,182 - +0.2 411,222 - -0.1 411,248 + -0.7 411,249 - +1.0 411,249 - +0.1 411,335 + GFF2812 0.20 -0.7 411,374 + GFF2812 0.24 -0.0 411,374 + GFF2812 0.24 -0.0 411,392 + GFF2812 0.27 -0.3 411,392 + GFF2812 0.27 -0.2 411,392 + GFF2812 0.27 +0.6 411,392 + GFF2812 0.27 -0.4 411,392 + GFF2812 0.27 -0.9 411,393 - GFF2812 0.27 +0.1 411,551 + GFF2812 0.46 -0.2 411,551 + GFF2812 0.46 +0.0 411,552 - GFF2812 0.46 -0.3 411,552 - GFF2812 0.46 -0.3 411,552 - GFF2812 0.46 +0.6 411,780 + GFF2812 0.74 -0.9 411,954 - +0.0 411,954 - -1.0 411,954 - -0.1 412,176 + GFF2813 0.57 +1.2 412,177 - GFF2813 0.58 -1.5 412,684 + GFF2814 0.16 +1.3 412,684 + GFF2814 0.16 -0.3 412,684 + GFF2814 0.16 +0.9 412,685 - GFF2814 0.16 +0.5 412,763 + GFF2814 0.21 +0.3 412,763 + GFF2814 0.21 -0.5 412,764 - GFF2814 0.21 -0.9 412,805 + GFF2814 0.23 -0.3 412,806 - GFF2814 0.23 +0.4 412,838 + GFF2814 0.25 +0.3 412,839 - GFF2814 0.25 -0.7 412,839 - GFF2814 0.25 +0.5 412,839 - GFF2814 0.25 +0.0 412,862 + GFF2814 0.27 +0.2 412,862 + GFF2814 0.27 +0.5 412,863 - GFF2814 0.27 -0.8 412,863 - GFF2814 0.27 -0.3 412,934 + GFF2814 0.31 -0.3 412,968 - GFF2814 0.33 -0.7
Or see this region's nucleotide sequence