Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2773 and GFF2774 are separated by 128 nucleotides GFF2774 and GFF2775 are separated by 40 nucleotides
GFF2773 - Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 372,428 to 373,336
GFF2773
GFF2774 - Tricarboxylate transport protein TctC, at 373,465 to 374,460
GFF2774
GFF2775 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 374,501 to 376,189
GFF2775
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.952 kb on - strand, within GFF2773 at 373.466 kb on + strand at 373.467 kb on - strand at 373.467 kb on - strand at 373.514 kb on + strand at 373.515 kb on - strand at 373.539 kb on - strand at 373.799 kb on + strand, within GFF2774 at 373.800 kb on - strand, within GFF2774 at 373.800 kb on - strand, within GFF2774 at 373.800 kb on - strand, within GFF2774 at 373.800 kb on - strand, within GFF2774 at 373.800 kb on - strand, within GFF2774 at 373.800 kb on - strand, within GFF2774 at 373.967 kb on + strand, within GFF2774 at 373.968 kb on - strand, within GFF2774 at 373.968 kb on - strand, within GFF2774 at 373.968 kb on - strand, within GFF2774 at 373.968 kb on - strand, within GFF2774 at 374.006 kb on + strand, within GFF2774 at 374.006 kb on + strand, within GFF2774 at 374.007 kb on - strand, within GFF2774 at 374.025 kb on - strand, within GFF2774 at 374.061 kb on - strand, within GFF2774 at 374.081 kb on + strand, within GFF2774 at 374.081 kb on + strand, within GFF2774 at 374.081 kb on + strand, within GFF2774 at 374.082 kb on - strand, within GFF2774 at 374.082 kb on - strand, within GFF2774 at 374.082 kb on - strand, within GFF2774 at 374.082 kb on - strand, within GFF2774 at 374.082 kb on - strand, within GFF2774 at 374.165 kb on + strand, within GFF2774 at 374.166 kb on - strand, within GFF2774 at 374.352 kb on - strand, within GFF2774 at 374.625 kb on + strand at 374.625 kb on + strand at 374.625 kb on + strand at 374.626 kb on - strand at 374.781 kb on + strand, within GFF2775 at 374.781 kb on + strand, within GFF2775 at 374.782 kb on - strand, within GFF2775 at 374.782 kb on - strand, within GFF2775 at 374.782 kb on - strand, within GFF2775 at 374.782 kb on - strand, within GFF2775 at 374.782 kb on - strand, within GFF2775 at 374.782 kb on - strand, within GFF2775 at 374.865 kb on + strand, within GFF2775 at 374.865 kb on + strand, within GFF2775 at 374.866 kb on - strand, within GFF2775 at 374.941 kb on + strand, within GFF2775 at 375.156 kb on - strand, within GFF2775 at 375.159 kb on + strand, within GFF2775 at 375.159 kb on + strand, within GFF2775 at 375.159 kb on + strand, within GFF2775 at 375.159 kb on + strand, within GFF2775 at 375.160 kb on - strand, within GFF2775 at 375.160 kb on - strand, within GFF2775 at 375.393 kb on + strand, within GFF2775 at 375.393 kb on + strand, within GFF2775 at 375.393 kb on + strand, within GFF2775 at 375.393 kb on + strand, within GFF2775 at 375.394 kb on - strand, within GFF2775 at 375.394 kb on - strand, within GFF2775
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 372,952 - GFF2773 0.58 +0.3 373,466 + +0.2 373,467 - -0.3 373,467 - +1.3 373,514 + +0.8 373,515 - -1.5 373,539 - -0.8 373,799 + GFF2774 0.34 +0.5 373,800 - GFF2774 0.34 +1.3 373,800 - GFF2774 0.34 +0.6 373,800 - GFF2774 0.34 -0.3 373,800 - GFF2774 0.34 -0.1 373,800 - GFF2774 0.34 +0.2 373,800 - GFF2774 0.34 +0.4 373,967 + GFF2774 0.50 -1.0 373,968 - GFF2774 0.51 -0.0 373,968 - GFF2774 0.51 +1.3 373,968 - GFF2774 0.51 +1.3 373,968 - GFF2774 0.51 -1.0 374,006 + GFF2774 0.54 +0.0 374,006 + GFF2774 0.54 -0.5 374,007 - GFF2774 0.54 +0.8 374,025 - GFF2774 0.56 +0.0 374,061 - GFF2774 0.60 -0.8 374,081 + GFF2774 0.62 +0.6 374,081 + GFF2774 0.62 +0.0 374,081 + GFF2774 0.62 +0.4 374,082 - GFF2774 0.62 +0.0 374,082 - GFF2774 0.62 +0.2 374,082 - GFF2774 0.62 +0.4 374,082 - GFF2774 0.62 +0.4 374,082 - GFF2774 0.62 -0.2 374,165 + GFF2774 0.70 +0.0 374,166 - GFF2774 0.70 +0.1 374,352 - GFF2774 0.89 +0.1 374,625 + +2.3 374,625 + -0.0 374,625 + -3.2 374,626 - -0.0 374,781 + GFF2775 0.17 -1.2 374,781 + GFF2775 0.17 -0.4 374,782 - GFF2775 0.17 +0.0 374,782 - GFF2775 0.17 +0.5 374,782 - GFF2775 0.17 -1.0 374,782 - GFF2775 0.17 -0.6 374,782 - GFF2775 0.17 +1.3 374,782 - GFF2775 0.17 -2.0 374,865 + GFF2775 0.22 -0.3 374,865 + GFF2775 0.22 +0.8 374,866 - GFF2775 0.22 +0.4 374,941 + GFF2775 0.26 +0.3 375,156 - GFF2775 0.39 -0.3 375,159 + GFF2775 0.39 -0.5 375,159 + GFF2775 0.39 -1.3 375,159 + GFF2775 0.39 +0.2 375,159 + GFF2775 0.39 -1.0 375,160 - GFF2775 0.39 +0.7 375,160 - GFF2775 0.39 +0.5 375,393 + GFF2775 0.53 -0.4 375,393 + GFF2775 0.53 +0.6 375,393 + GFF2775 0.53 -0.6 375,393 + GFF2775 0.53 -0.5 375,394 - GFF2775 0.53 +0.7 375,394 - GFF2775 0.53 +0.8
Or see this region's nucleotide sequence