Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2721 and GFF2722 are separated by 126 nucleotides GFF2722 and GFF2723 overlap by 17 nucleotides GFF2723 and GFF2724 are separated by 670 nucleotides
GFF2721 - Twitching motility protein PilT, at 311,360 to 312,316
GFF2721
GFF2722 - Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC, at 312,443 to 313,162
GFF2722
GFF2723 - hypothetical protein, at 313,146 to 313,694
GFF2723
GFF2724 - hypothetical protein, at 314,365 to 315,942
GFF2724
Position (kb) 313
314 Strain fitness (log2 ratio) -1
0
1
2 at 312.216 kb on + strand, within GFF2721 at 312.216 kb on + strand, within GFF2721 at 312.217 kb on - strand, within GFF2721 at 312.217 kb on - strand, within GFF2721 at 312.217 kb on - strand, within GFF2721 at 312.249 kb on + strand at 312.249 kb on + strand at 312.249 kb on + strand at 312.249 kb on + strand at 312.250 kb on - strand at 312.250 kb on - strand at 312.320 kb on + strand at 312.320 kb on + strand at 312.320 kb on + strand at 312.321 kb on - strand at 312.397 kb on + strand at 312.430 kb on - strand at 312.430 kb on - strand at 312.442 kb on + strand at 312.442 kb on + strand at 312.614 kb on + strand, within GFF2722 at 312.614 kb on + strand, within GFF2722 at 312.614 kb on + strand, within GFF2722 at 312.615 kb on - strand, within GFF2722 at 312.615 kb on - strand, within GFF2722 at 313.261 kb on + strand, within GFF2723 at 313.261 kb on + strand, within GFF2723 at 313.262 kb on - strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.285 kb on + strand, within GFF2723 at 313.286 kb on - strand, within GFF2723 at 313.767 kb on + strand at 313.774 kb on - strand at 313.788 kb on - strand at 313.788 kb on - strand at 313.928 kb on + strand at 313.928 kb on + strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.068 kb on - strand at 314.082 kb on + strand at 314.083 kb on - strand at 314.186 kb on - strand at 314.186 kb on - strand at 314.237 kb on - strand at 314.237 kb on - strand at 314.304 kb on + strand at 314.304 kb on + strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.305 kb on - strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.394 kb on + strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.395 kb on - strand at 314.420 kb on + strand at 314.420 kb on + strand at 314.421 kb on - strand at 314.421 kb on - strand at 314.421 kb on - strand at 314.545 kb on + strand, within GFF2724 at 314.545 kb on + strand, within GFF2724 at 314.581 kb on + strand, within GFF2724 at 314.581 kb on + strand, within GFF2724 at 314.581 kb on + strand, within GFF2724 at 314.582 kb on - strand, within GFF2724 at 314.582 kb on - strand, within GFF2724 at 314.582 kb on - strand, within GFF2724 at 314.593 kb on + strand, within GFF2724
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 312,216 + GFF2721 0.89 +0.1 312,216 + GFF2721 0.89 -0.3 312,217 - GFF2721 0.90 -0.9 312,217 - GFF2721 0.90 +1.6 312,217 - GFF2721 0.90 -0.8 312,249 + +1.0 312,249 + -0.1 312,249 + -0.1 312,249 + +0.8 312,250 - +1.3 312,250 - +1.2 312,320 + +1.9 312,320 + +0.1 312,320 + +0.4 312,321 - +0.3 312,397 + -0.7 312,430 - -0.0 312,430 - -0.3 312,442 + +0.5 312,442 + -0.6 312,614 + GFF2722 0.24 -0.3 312,614 + GFF2722 0.24 +0.6 312,614 + GFF2722 0.24 -0.1 312,615 - GFF2722 0.24 +0.5 312,615 - GFF2722 0.24 -0.1 313,261 + GFF2723 0.21 +0.3 313,261 + GFF2723 0.21 +0.3 313,262 - GFF2723 0.21 -0.5 313,285 + GFF2723 0.25 -1.0 313,285 + GFF2723 0.25 -1.2 313,285 + GFF2723 0.25 +0.4 313,285 + GFF2723 0.25 -1.0 313,285 + GFF2723 0.25 -1.6 313,286 - GFF2723 0.26 -0.4 313,767 + +0.2 313,774 - -0.2 313,788 - -0.4 313,788 - +0.3 313,928 + -0.9 313,928 + -0.1 314,068 - +0.2 314,068 - -0.9 314,068 - +1.3 314,068 - +0.4 314,068 - -1.0 314,068 - +0.3 314,068 - +0.5 314,082 + +0.4 314,083 - -0.1 314,186 - +0.3 314,186 - -1.7 314,237 - -0.4 314,237 - +0.7 314,304 + +0.1 314,304 + -0.3 314,305 - -0.5 314,305 - -0.2 314,305 - +0.5 314,305 - +0.1 314,305 - +0.9 314,394 + +0.4 314,394 + +0.3 314,394 + +0.2 314,394 + -0.0 314,394 + +0.3 314,394 + +0.4 314,394 + -0.3 314,395 - -0.7 314,395 - +0.2 314,395 - -0.1 314,395 - -0.3 314,395 - -0.2 314,395 - +1.3 314,395 - +0.4 314,395 - -0.5 314,395 - -0.6 314,420 + -0.3 314,420 + -0.5 314,421 - -0.8 314,421 - +0.2 314,421 - +0.1 314,545 + GFF2724 0.11 +0.7 314,545 + GFF2724 0.11 -1.3 314,581 + GFF2724 0.14 +1.3 314,581 + GFF2724 0.14 +0.1 314,581 + GFF2724 0.14 +0.0 314,582 - GFF2724 0.14 +1.7 314,582 - GFF2724 0.14 -0.4 314,582 - GFF2724 0.14 +0.2 314,593 + GFF2724 0.14 -0.0
Or see this region's nucleotide sequence