Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2638 and GFF2639 are separated by 34 nucleotides GFF2639 and GFF2640 overlap by 4 nucleotides GFF2640 and GFF2641 are separated by 44 nucleotides
GFF2638 - Conserved uncharacterized protein CreA, at 234,720 to 235,193
GFF2638
GFF2639 - hypothetical protein, at 235,228 to 235,707
GFF2639
GFF2640 - Single-stranded DNA-binding protein, at 235,704 to 236,015
GFF2640
GFF2641 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 236,060 to 237,340
GFF2641
Position (kb) 235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 234.885 kb on + strand, within GFF2638 at 234.885 kb on + strand, within GFF2638 at 234.885 kb on + strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 235.098 kb on + strand, within GFF2638 at 235.108 kb on - strand, within GFF2638 at 235.215 kb on + strand at 235.215 kb on + strand at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.642 kb on + strand, within GFF2639 at 235.776 kb on + strand, within GFF2640 at 236.439 kb on - strand, within GFF2641 at 236.439 kb on - strand, within GFF2641 at 236.765 kb on + strand, within GFF2641 at 236.765 kb on + strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.766 kb on - strand, within GFF2641 at 236.831 kb on + strand, within GFF2641 at 236.831 kb on + strand, within GFF2641
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 234,885 + GFF2638 0.35 -0.3 234,885 + GFF2638 0.35 +0.7 234,885 + GFF2638 0.35 -0.5 234,886 - GFF2638 0.35 +0.6 234,886 - GFF2638 0.35 -0.6 234,886 - GFF2638 0.35 +0.3 234,886 - GFF2638 0.35 +0.9 235,098 + GFF2638 0.80 -0.6 235,108 - GFF2638 0.82 -0.6 235,215 + +0.1 235,215 + -0.0 235,339 + GFF2639 0.23 +1.0 235,339 + GFF2639 0.23 +0.0 235,339 + GFF2639 0.23 +0.0 235,339 + GFF2639 0.23 -0.0 235,339 + GFF2639 0.23 +1.1 235,339 + GFF2639 0.23 -1.0 235,339 + GFF2639 0.23 +0.7 235,340 - GFF2639 0.23 +0.2 235,340 - GFF2639 0.23 +0.9 235,340 - GFF2639 0.23 +0.2 235,340 - GFF2639 0.23 +1.2 235,642 + GFF2639 0.86 +0.8 235,776 + GFF2640 0.23 +0.5 236,439 - GFF2641 0.30 -1.5 236,439 - GFF2641 0.30 -0.4 236,765 + GFF2641 0.55 +0.1 236,765 + GFF2641 0.55 -1.0 236,766 - GFF2641 0.55 +1.6 236,766 - GFF2641 0.55 +0.1 236,766 - GFF2641 0.55 -2.9 236,766 - GFF2641 0.55 +0.8 236,766 - GFF2641 0.55 +0.5 236,831 + GFF2641 0.60 +0.8 236,831 + GFF2641 0.60 -2.1
Or see this region's nucleotide sequence