Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2633 and GFF2634 are separated by 355 nucleotides GFF2634 and GFF2635 are separated by 8 nucleotides GFF2635 and GFF2636 are separated by 127 nucleotides
GFF2633 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 227,395 to 230,493
GFF2633
GFF2634 - hypothetical protein, at 230,849 to 231,169
GFF2634
GFF2635 - Transcriptional regulator, HxlR family, at 231,178 to 231,861
GFF2635
GFF2636 - Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) @ 2-heptaprenyl-1,4-naphthoquinone methyltransferase (EC 2.1.1.163), at 231,989 to 232,870
GFF2636
Position (kb) 231
232 Strain fitness (log2 ratio) -2
-1
0
1
2 at 230.532 kb on - strand at 230.532 kb on - strand at 230.550 kb on + strand at 230.666 kb on + strand at 230.666 kb on + strand at 230.666 kb on + strand at 230.666 kb on + strand at 230.666 kb on + strand at 230.666 kb on + strand at 230.667 kb on - strand at 230.667 kb on - strand at 230.667 kb on - strand at 230.667 kb on - strand at 230.667 kb on - strand at 230.667 kb on - strand at 230.670 kb on + strand at 230.670 kb on + strand at 230.670 kb on + strand at 230.677 kb on + strand at 230.678 kb on - strand at 230.709 kb on + strand at 230.709 kb on + strand at 230.709 kb on + strand at 230.709 kb on + strand at 230.710 kb on - strand at 230.908 kb on + strand, within GFF2634 at 230.909 kb on - strand, within GFF2634 at 230.912 kb on + strand, within GFF2634 at 231.131 kb on + strand, within GFF2634 at 231.283 kb on + strand, within GFF2635 at 231.283 kb on + strand, within GFF2635 at 231.283 kb on + strand, within GFF2635 at 231.638 kb on + strand, within GFF2635 at 231.639 kb on - strand, within GFF2635 at 231.814 kb on + strand at 231.815 kb on - strand at 231.837 kb on + strand at 231.838 kb on - strand at 231.851 kb on + strand at 231.851 kb on + strand at 231.851 kb on + strand at 231.851 kb on + strand at 231.852 kb on - strand at 231.852 kb on - strand at 231.896 kb on + strand at 231.897 kb on - strand at 232.407 kb on - strand, within GFF2636 at 232.407 kb on - strand, within GFF2636 at 232.407 kb on - strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.484 kb on + strand, within GFF2636 at 232.485 kb on - strand, within GFF2636
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 230,532 - -1.8 230,532 - -0.6 230,550 + -0.9 230,666 + +0.6 230,666 + +0.4 230,666 + +0.1 230,666 + -0.7 230,666 + -1.0 230,666 + -0.9 230,667 - -0.3 230,667 - +0.4 230,667 - +0.1 230,667 - -1.6 230,667 - -0.4 230,667 - +0.2 230,670 + -0.5 230,670 + +0.5 230,670 + -0.3 230,677 + +0.3 230,678 - -0.6 230,709 + +1.4 230,709 + +0.0 230,709 + +0.7 230,709 + +0.1 230,710 - +0.7 230,908 + GFF2634 0.18 -0.4 230,909 - GFF2634 0.19 -0.2 230,912 + GFF2634 0.20 -1.1 231,131 + GFF2634 0.88 -0.1 231,283 + GFF2635 0.15 +0.3 231,283 + GFF2635 0.15 +0.4 231,283 + GFF2635 0.15 +0.0 231,638 + GFF2635 0.67 +0.6 231,639 - GFF2635 0.67 +1.4 231,814 + +0.8 231,815 - -0.1 231,837 + +1.8 231,838 - -0.2 231,851 + +0.8 231,851 + -0.5 231,851 + -0.6 231,851 + -1.7 231,852 - -1.6 231,852 - +0.4 231,896 + +0.1 231,897 - -0.6 232,407 - GFF2636 0.47 +0.6 232,407 - GFF2636 0.47 +0.3 232,407 - GFF2636 0.47 -0.2 232,484 + GFF2636 0.56 +0.2 232,484 + GFF2636 0.56 +0.2 232,484 + GFF2636 0.56 +0.5 232,485 - GFF2636 0.56 -0.2
Or see this region's nucleotide sequence