Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2577 and GFF2578 are separated by 232 nucleotides GFF2578 and GFF2579 overlap by 4 nucleotides GFF2579 and GFF2580 are separated by 152 nucleotides
GFF2577 - Phosphoglycerol transferase I (EC 2.7.8.20), at 168,159 to 170,732
GFF2577
GFF2578 - Two-component system response regulator QseB, at 170,965 to 171,678
GFF2578
GFF2579 - Tricarboxylate transport sensor protein TctE, at 171,675 to 173,021
GFF2579
GFF2580 - inner membrane protein, at 173,174 to 174,847
GFF2580
Position (kb) 171
172
173
174 Strain fitness (log2 ratio) -1
0
1 at 170.781 kb on + strand at 170.781 kb on + strand at 170.781 kb on + strand at 170.782 kb on - strand at 170.874 kb on - strand at 171.277 kb on + strand, within GFF2578 at 171.277 kb on + strand, within GFF2578 at 171.277 kb on + strand, within GFF2578 at 171.277 kb on + strand, within GFF2578 at 171.277 kb on + strand, within GFF2578 at 171.718 kb on - strand at 172.140 kb on + strand, within GFF2579 at 172.141 kb on - strand, within GFF2579 at 172.665 kb on + strand, within GFF2579 at 172.665 kb on + strand, within GFF2579 at 173.019 kb on + strand at 173.019 kb on + strand at 173.020 kb on - strand at 173.020 kb on - strand at 173.020 kb on - strand at 173.020 kb on - strand at 173.417 kb on + strand, within GFF2580 at 173.699 kb on + strand, within GFF2580 at 173.726 kb on + strand, within GFF2580 at 173.817 kb on - strand, within GFF2580 at 173.897 kb on + strand, within GFF2580
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 170,781 + +0.2 170,781 + +0.2 170,781 + +0.0 170,782 - +1.4 170,874 - +0.7 171,277 + GFF2578 0.44 +0.1 171,277 + GFF2578 0.44 +0.4 171,277 + GFF2578 0.44 -0.2 171,277 + GFF2578 0.44 +0.5 171,277 + GFF2578 0.44 +0.2 171,718 - +1.4 172,140 + GFF2579 0.35 +1.0 172,141 - GFF2579 0.35 +0.4 172,665 + GFF2579 0.73 +0.8 172,665 + GFF2579 0.73 +0.1 173,019 + +0.9 173,019 + -0.8 173,020 - +0.3 173,020 - -0.2 173,020 - -0.4 173,020 - +0.6 173,417 + GFF2580 0.15 -0.4 173,699 + GFF2580 0.31 +1.1 173,726 + GFF2580 0.33 +0.8 173,817 - GFF2580 0.38 +0.4 173,897 + GFF2580 0.43 +0.2
Or see this region's nucleotide sequence