Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2536 and GFF2537 overlap by 4 nucleotides GFF2537 and GFF2538 are separated by 15 nucleotides GFF2538 and GFF2539 are separated by 157 nucleotides
GFF2536 - two-component hybrid sensor and regulator, at 122,068 to 124,149
GFF2536
GFF2537 - Two-component response regulator, at 124,146 to 124,775
GFF2537
GFF2538 - hypothetical protein, at 124,791 to 124,943
GFF2538
GFF2539 - Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-), at 125,101 to 126,141
GFF2539
Position (kb) 124
125 Strain fitness (log2 ratio) -2
-1
0
1 at 123.196 kb on + strand, within GFF2536 at 123.451 kb on + strand, within GFF2536 at 124.133 kb on + strand at 124.133 kb on + strand at 124.134 kb on - strand at 124.134 kb on - strand at 124.134 kb on - strand at 124.134 kb on - strand at 124.173 kb on + strand at 124.251 kb on + strand, within GFF2537 at 124.251 kb on + strand, within GFF2537 at 124.453 kb on + strand, within GFF2537 at 125.024 kb on + strand at 125.024 kb on + strand at 125.025 kb on - strand at 125.062 kb on + strand at 125.063 kb on - strand at 125.063 kb on - strand at 125.404 kb on + strand, within GFF2539 at 125.404 kb on + strand, within GFF2539 at 125.447 kb on - strand, within GFF2539 at 125.500 kb on + strand, within GFF2539 at 125.500 kb on + strand, within GFF2539 at 125.500 kb on + strand, within GFF2539
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 123,196 + GFF2536 0.54 +0.9 123,451 + GFF2536 0.66 +0.8 124,133 + -1.1 124,133 + +0.8 124,134 - -1.4 124,134 - -0.6 124,134 - -1.5 124,134 - -1.9 124,173 + +1.3 124,251 + GFF2537 0.17 +1.0 124,251 + GFF2537 0.17 +0.4 124,453 + GFF2537 0.49 +1.0 125,024 + -1.1 125,024 + -0.6 125,025 - +0.0 125,062 + -1.6 125,063 - -1.0 125,063 - -1.0 125,404 + GFF2539 0.29 +0.4 125,404 + GFF2539 0.29 +0.0 125,447 - GFF2539 0.33 -1.8 125,500 + GFF2539 0.38 -0.4 125,500 + GFF2539 0.38 -2.2 125,500 + GFF2539 0.38 -1.6
Or see this region's nucleotide sequence