Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2493

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2491 and GFF2492 are separated by 12 nucleotidesGFF2492 and GFF2493 overlap by 7 nucleotidesGFF2493 and GFF2494 are separated by 16 nucleotidesGFF2494 and GFF2495 are separated by 91 nucleotides GFF2491 - Extracellular protease precursor (EC 3.4.21.-), at 76,144 to 77,961 GFF2491 GFF2492 - hypothetical protein, at 77,974 to 78,717 GFF2492 GFF2493 - Biotin--protein ligase (EC 6.3.4.9, EC 6.3.4.10, EC 6.3.4.11, EC 6.3.4.15), at 78,711 to 79,514 GFF2493 GFF2494 - Proteins containing SET domain, at 79,531 to 80,073 GFF2494 GFF2495 - DNA topoisomerase III, Burkholderia type (EC 5.99.1.2), at 80,165 to 83,107 GFF2495 Position (kb) 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.773 kb on + strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 77.774 kb on - strand, within GFF2491at 78.071 kb on + strand, within GFF2492at 78.072 kb on - strand, within GFF2492at 78.072 kb on - strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.170 kb on + strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.171 kb on - strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.293 kb on + strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.294 kb on - strand, within GFF2492at 78.650 kb on + strandat 78.650 kb on - strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.671 kb on + strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 78.672 kb on - strandat 79.479 kb on + strandat 79.480 kb on - strandat 79.480 kb on - strandat 79.613 kb on + strand, within GFF2494at 79.614 kb on - strand, within GFF2494at 79.637 kb on + strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.638 kb on - strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.661 kb on + strand, within GFF2494at 79.662 kb on - strand, within GFF2494at 79.662 kb on - strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.667 kb on + strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.668 kb on - strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.829 kb on + strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.830 kb on - strand, within GFF2494at 79.907 kb on + strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.908 kb on - strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.949 kb on + strand, within GFF2494at 79.950 kb on - strand, within GFF2494at 79.950 kb on - strand, within GFF2494at 79.950 kb on - strand, within GFF2494at 80.083 kb on + strandat 80.083 kb on + strandat 80.083 kb on + strandat 80.083 kb on + strandat 80.084 kb on - strandat 80.084 kb on - strandat 80.136 kb on + strandat 80.136 kb on + strandat 80.137 kb on - strandat 80.137 kb on - strandat 80.160 kb on + strandat 80.160 kb on + strandat 80.160 kb on + strandat 80.160 kb on + strandat 80.161 kb on - strandat 80.161 kb on - strandat 80.161 kb on - strandat 80.161 kb on - strandat 80.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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77,773 + GFF2491 0.90 +0.5
77,773 + GFF2491 0.90 -0.0
77,773 + GFF2491 0.90 +0.2
77,773 + GFF2491 0.90 -1.1
77,773 + GFF2491 0.90 +0.1
77,773 + GFF2491 0.90 -1.2
77,773 + GFF2491 0.90 +0.2
77,773 + GFF2491 0.90 +0.0
77,773 + GFF2491 0.90 -0.4
77,773 + GFF2491 0.90 -0.4
77,773 + GFF2491 0.90 -0.3
77,773 + GFF2491 0.90 +0.1
77,773 + GFF2491 0.90 -0.1
77,773 + GFF2491 0.90 +0.3
77,773 + GFF2491 0.90 +0.5
77,773 + GFF2491 0.90 +1.2
77,773 + GFF2491 0.90 +0.5
77,774 - GFF2491 0.90 +0.4
77,774 - GFF2491 0.90 +0.9
77,774 - GFF2491 0.90 +1.7
77,774 - GFF2491 0.90 +1.1
77,774 - GFF2491 0.90 +0.6
77,774 - GFF2491 0.90 -0.2
77,774 - GFF2491 0.90 +1.6
77,774 - GFF2491 0.90 -0.1
77,774 - GFF2491 0.90 +1.0
77,774 - GFF2491 0.90 -0.2
77,774 - GFF2491 0.90 +0.4
77,774 - GFF2491 0.90 -0.1
77,774 - GFF2491 0.90 -0.5
77,774 - GFF2491 0.90 -1.0
77,774 - GFF2491 0.90 -0.5
77,774 - GFF2491 0.90 -0.5
77,774 - GFF2491 0.90 +0.0
78,071 + GFF2492 0.13 +0.0
78,072 - GFF2492 0.13 -0.8
78,072 - GFF2492 0.13 +1.4
78,170 + GFF2492 0.26 -0.1
78,170 + GFF2492 0.26 +1.6
78,170 + GFF2492 0.26 +0.1
78,170 + GFF2492 0.26 -0.4
78,171 - GFF2492 0.26 -0.3
78,171 - GFF2492 0.26 +0.0
78,171 - GFF2492 0.26 +0.4
78,171 - GFF2492 0.26 +0.1
78,171 - GFF2492 0.26 +0.6
78,293 + GFF2492 0.43 +0.1
78,293 + GFF2492 0.43 -1.0
78,293 + GFF2492 0.43 +1.8
78,293 + GFF2492 0.43 -0.1
78,293 + GFF2492 0.43 -3.4
78,293 + GFF2492 0.43 -2.2
78,294 - GFF2492 0.43 -0.5
78,294 - GFF2492 0.43 -2.4
78,294 - GFF2492 0.43 -0.3
78,294 - GFF2492 0.43 +0.5
78,294 - GFF2492 0.43 +0.0
78,294 - GFF2492 0.43 +0.4
78,294 - GFF2492 0.43 +0.9
78,294 - GFF2492 0.43 -0.1
78,650 + +1.4
78,650 - +0.7
78,671 + +0.4
78,671 + +0.3
78,671 + +0.5
78,671 + +0.2
78,672 - +0.2
78,672 - -0.8
78,672 - +0.4
78,672 - -0.1
78,672 - +0.5
78,672 - +0.5
79,479 + +0.1
79,480 - +0.4
79,480 - +0.2
79,613 + GFF2494 0.15 -0.4
79,614 - GFF2494 0.15 +0.9
79,637 + GFF2494 0.20 +0.8
79,638 - GFF2494 0.20 +0.9
79,638 - GFF2494 0.20 -0.3
79,638 - GFF2494 0.20 -0.3
79,661 + GFF2494 0.24 +0.2
79,661 + GFF2494 0.24 +0.0
79,661 + GFF2494 0.24 +1.4
79,662 - GFF2494 0.24 +0.5
79,662 - GFF2494 0.24 -0.7
79,667 + GFF2494 0.25 -0.0
79,667 + GFF2494 0.25 -0.6
79,667 + GFF2494 0.25 +0.9
79,667 + GFF2494 0.25 -0.1
79,668 - GFF2494 0.25 -0.2
79,668 - GFF2494 0.25 -0.1
79,668 - GFF2494 0.25 -0.5
79,668 - GFF2494 0.25 -0.2
79,668 - GFF2494 0.25 -0.2
79,668 - GFF2494 0.25 +0.9
79,668 - GFF2494 0.25 -0.5
79,668 - GFF2494 0.25 +0.6
79,668 - GFF2494 0.25 +0.3
79,668 - GFF2494 0.25 +0.0
79,668 - GFF2494 0.25 -0.1
79,829 + GFF2494 0.55 +0.9
79,829 + GFF2494 0.55 -0.1
79,829 + GFF2494 0.55 -1.2
79,829 + GFF2494 0.55 -0.8
79,829 + GFF2494 0.55 -3.6
79,830 - GFF2494 0.55 -1.2
79,830 - GFF2494 0.55 +0.4
79,830 - GFF2494 0.55 +0.3
79,830 - GFF2494 0.55 +1.4
79,830 - GFF2494 0.55 +0.7
79,907 + GFF2494 0.69 +0.8
79,908 - GFF2494 0.69 +0.5
79,908 - GFF2494 0.69 +0.0
79,908 - GFF2494 0.69 +0.8
79,908 - GFF2494 0.69 -1.3
79,908 - GFF2494 0.69 -0.1
79,908 - GFF2494 0.69 -1.1
79,949 + GFF2494 0.77 +1.0
79,949 + GFF2494 0.77 +0.1
79,949 + GFF2494 0.77 +1.0
79,949 + GFF2494 0.77 +0.1
79,950 - GFF2494 0.77 -0.8
79,950 - GFF2494 0.77 -0.4
79,950 - GFF2494 0.77 +0.6
80,083 + +2.1
80,083 + +0.1
80,083 + +0.4
80,083 + +0.9
80,084 - +0.0
80,084 - +0.1
80,136 + -0.2
80,136 + +0.4
80,137 - -0.6
80,137 - -0.6
80,160 + -1.1
80,160 + +0.8
80,160 + -0.5
80,160 + -0.1
80,161 - -1.5
80,161 - -0.9
80,161 - -2.2
80,161 - -3.0
80,161 - -1.0

Or see this region's nucleotide sequence