Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2384 and GFF2385 are separated by 227 nucleotides GFF2385 and GFF2386 are separated by 140 nucleotides GFF2386 and GFF2387 are separated by 104 nucleotides GFF2387 and GFF2388 are separated by 2 nucleotides
GFF2384 - hypothetical protein, at 27,227 to 27,400
GFF2384
GFF2385 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 27,628 to 28,155
GFF2385
GFF2386 - Pca regulon regulatory protein PcaR, at 28,296 to 29,087
GFF2386
GFF2387 - hypothetical protein, at 29,192 to 30,070
GFF2387
GFF2388 - monooxygenase, FAD-binding, at 30,073 to 31,617
GFF2388
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1 at 27.382 kb on + strand, within GFF2384 at 27.382 kb on + strand, within GFF2384 at 27.382 kb on + strand, within GFF2384 at 27.382 kb on + strand, within GFF2384 at 27.382 kb on + strand, within GFF2384 at 27.383 kb on - strand at 27.383 kb on - strand at 27.383 kb on - strand at 27.383 kb on - strand at 27.553 kb on + strand at 27.566 kb on - strand at 27.593 kb on + strand at 27.593 kb on + strand at 27.593 kb on + strand at 27.594 kb on - strand at 27.594 kb on - strand at 27.594 kb on - strand at 27.594 kb on - strand at 27.594 kb on - strand at 27.796 kb on + strand, within GFF2385 at 27.796 kb on + strand, within GFF2385 at 27.796 kb on + strand, within GFF2385 at 28.117 kb on + strand at 28.117 kb on + strand at 28.117 kb on + strand at 28.118 kb on - strand at 28.227 kb on + strand at 28.228 kb on - strand at 28.228 kb on - strand at 28.266 kb on - strand at 28.266 kb on - strand at 28.334 kb on + strand at 28.334 kb on + strand at 28.334 kb on + strand at 28.335 kb on - strand at 28.411 kb on + strand, within GFF2386 at 28.411 kb on + strand, within GFF2386 at 28.411 kb on + strand, within GFF2386 at 28.411 kb on + strand, within GFF2386 at 28.412 kb on + strand, within GFF2386 at 28.412 kb on - strand, within GFF2386 at 28.412 kb on - strand, within GFF2386 at 28.412 kb on - strand, within GFF2386 at 28.412 kb on - strand, within GFF2386 at 28.412 kb on - strand, within GFF2386 at 28.537 kb on + strand, within GFF2386 at 28.537 kb on + strand, within GFF2386 at 28.538 kb on - strand, within GFF2386 at 28.538 kb on - strand, within GFF2386 at 28.762 kb on + strand, within GFF2386 at 28.762 kb on + strand, within GFF2386 at 28.762 kb on + strand, within GFF2386 at 28.873 kb on + strand, within GFF2386 at 28.874 kb on - strand, within GFF2386 at 28.874 kb on - strand, within GFF2386 at 28.904 kb on + strand, within GFF2386 at 28.942 kb on + strand, within GFF2386 at 28.943 kb on - strand, within GFF2386 at 28.964 kb on - strand, within GFF2386 at 28.970 kb on - strand, within GFF2386 at 28.975 kb on + strand, within GFF2386 at 29.074 kb on + strand at 29.206 kb on + strand at 29.206 kb on + strand at 29.206 kb on + strand at 29.206 kb on + strand at 29.207 kb on - strand at 29.207 kb on - strand at 29.207 kb on - strand at 29.207 kb on - strand at 29.337 kb on + strand, within GFF2387 at 29.337 kb on + strand, within GFF2387 at 29.715 kb on + strand, within GFF2387 at 29.715 kb on + strand, within GFF2387 at 29.716 kb on - strand, within GFF2387 at 29.716 kb on - strand, within GFF2387 at 29.865 kb on + strand, within GFF2387 at 29.865 kb on + strand, within GFF2387 at 29.866 kb on - strand, within GFF2387 at 29.866 kb on - strand, within GFF2387 at 30.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 27,382 + GFF2384 0.89 +0.2 27,382 + GFF2384 0.89 -1.2 27,382 + GFF2384 0.89 -0.1 27,382 + GFF2384 0.89 -1.9 27,382 + GFF2384 0.89 +0.8 27,383 - +0.0 27,383 - -0.1 27,383 - +0.5 27,383 - -0.5 27,553 + -1.8 27,566 - -0.6 27,593 + -0.9 27,593 + +0.6 27,593 + -0.8 27,594 - -0.3 27,594 - +0.2 27,594 - -1.6 27,594 - -1.6 27,594 - -0.5 27,796 + GFF2385 0.32 +1.1 27,796 + GFF2385 0.32 -0.8 27,796 + GFF2385 0.32 +0.1 28,117 + -0.0 28,117 + -0.5 28,117 + -0.7 28,118 - -0.2 28,227 + -0.2 28,228 - -0.8 28,228 - -0.7 28,266 - +0.6 28,266 - +0.2 28,334 + +0.1 28,334 + -0.5 28,334 + +0.7 28,335 - +0.1 28,411 + GFF2386 0.15 +0.5 28,411 + GFF2386 0.15 -0.8 28,411 + GFF2386 0.15 -0.2 28,411 + GFF2386 0.15 -0.8 28,412 + GFF2386 0.15 +0.4 28,412 - GFF2386 0.15 -1.4 28,412 - GFF2386 0.15 -0.1 28,412 - GFF2386 0.15 +0.4 28,412 - GFF2386 0.15 -0.8 28,412 - GFF2386 0.15 -0.4 28,537 + GFF2386 0.30 -1.0 28,537 + GFF2386 0.30 +0.9 28,538 - GFF2386 0.31 +0.0 28,538 - GFF2386 0.31 +0.0 28,762 + GFF2386 0.59 +0.4 28,762 + GFF2386 0.59 +0.4 28,762 + GFF2386 0.59 +0.2 28,873 + GFF2386 0.73 -1.6 28,874 - GFF2386 0.73 +0.0 28,874 - GFF2386 0.73 -0.6 28,904 + GFF2386 0.77 +0.1 28,942 + GFF2386 0.82 -1.7 28,943 - GFF2386 0.82 -0.6 28,964 - GFF2386 0.84 -0.1 28,970 - GFF2386 0.85 +1.2 28,975 + GFF2386 0.86 +0.1 29,074 + +0.8 29,206 + +1.1 29,206 + -0.6 29,206 + -1.1 29,206 + -0.5 29,207 - -0.2 29,207 - -0.8 29,207 - +0.1 29,207 - -0.4 29,337 + GFF2387 0.16 +0.2 29,337 + GFF2387 0.16 -0.1 29,715 + GFF2387 0.59 +0.2 29,715 + GFF2387 0.59 -0.7 29,716 - GFF2387 0.60 +0.0 29,716 - GFF2387 0.60 +0.0 29,865 + GFF2387 0.77 -0.9 29,865 + GFF2387 0.77 +0.8 29,866 - GFF2387 0.77 -1.1 29,866 - GFF2387 0.77 -0.6 30,052 + +0.8
Or see this region's nucleotide sequence