Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2297

Experiment: Ying_OrganicAcid7 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep A; time point 3
1,181,580	+				+0.2
1,181,581	-				+0.5
1,181,624	+				-0.5
1,181,624	+				-0.5
1,181,728	-		GFF2296	0.15	-0.4
1,181,734	-		GFF2296	0.16	+0.2
1,181,787	+		GFF2296	0.23	+0.2
1,181,787	+		GFF2296	0.23	+0.1
1,181,788	-		GFF2296	0.23	-0.3
1,181,788	-		GFF2296	0.23	+0.7
1,181,788	-		GFF2296	0.23	+0.1
1,181,982	+		GFF2296	0.49	+0.7
1,182,009	+		GFF2296	0.53	-0.5
1,182,357	+				-0.5
1,182,365	+				+0.3
1,182,366	-				-0.9
1,182,603	+		GFF2297	0.14	+1.1
1,182,657	+		GFF2297	0.17	-0.0
1,182,916	-		GFF2297	0.34	+0.7
1,182,916	-		GFF2297	0.34	-1.0
1,182,916	-		GFF2297	0.34	+1.1
1,182,981	+		GFF2297	0.39	+0.1
1,182,982	-		GFF2297	0.39	+0.6
1,183,161	+		GFF2297	0.51	-0.6
1,183,161	+		GFF2297	0.51	+0.3
1,183,162	-		GFF2297	0.51	+0.3
1,183,350	+		GFF2297	0.63	+0.6
1,183,350	+		GFF2297	0.63	+0.1
1,183,350	+		GFF2297	0.63	+0.6
1,183,351	-		GFF2297	0.63	-0.5
1,183,351	-		GFF2297	0.63	+1.1
1,183,497	+		GFF2297	0.73	-0.3
1,183,498	-		GFF2297	0.73	+0.3
1,183,498	-		GFF2297	0.73	-0.5
1,183,498	-		GFF2297	0.73	+0.2
1,183,498	-		GFF2297	0.73	+0.2
1,183,498	-		GFF2297	0.73	+0.1
1,183,878	+				+0.5
1,183,879	-				-1.0
1,184,189	+		GFF2298	0.29	-0.2
1,184,318	+		GFF2298	0.44	-0.9
1,184,319	-		GFF2298	0.44	+0.4
1,184,319	-		GFF2298	0.44	-1.7
1,184,624	+		GFF2298	0.80	+1.3
1,184,624	+		GFF2298	0.80	-0.1
1,184,893	+		GFF2299	0.25	+0.9
1,184,893	+		GFF2299	0.25	+0.1
1,184,894	-		GFF2299	0.25	+1.9
1,184,894	-		GFF2299	0.25	+0.3
1,184,894	-		GFF2299	0.25	+0.7