Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF214

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF213 and GFF214 are separated by 550 nucleotidesGFF214 and GFF215 are separated by 20 nucleotides GFF213 - Guanine deaminase (EC 3.5.4.3), at 231,256 to 232,536 GFF213 GFF214 - sensory box histidine kinase/response regulator, at 233,087 to 235,279 GFF214 GFF215 - hypothetical protein, at 235,300 to 237,249 GFF215 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2 3at 232.156 kb on + strand, within GFF213at 232.187 kb on - strand, within GFF213at 232.252 kb on + strand, within GFF213at 232.253 kb on - strand, within GFF213at 232.582 kb on - strandat 232.588 kb on + strandat 232.611 kb on + strandat 232.611 kb on + strandat 232.611 kb on + strandat 232.722 kb on + strandat 232.723 kb on - strandat 232.723 kb on - strandat 232.723 kb on - strandat 232.781 kb on + strandat 232.781 kb on + strandat 232.781 kb on + strandat 232.781 kb on + strandat 232.782 kb on - strandat 232.782 kb on - strandat 232.790 kb on + strandat 232.790 kb on + strandat 232.791 kb on - strandat 232.791 kb on - strandat 232.791 kb on - strandat 232.868 kb on + strandat 232.868 kb on + strandat 232.868 kb on + strandat 232.868 kb on + strandat 232.868 kb on + strandat 232.869 kb on - strandat 232.904 kb on + strandat 232.905 kb on - strandat 232.994 kb on + strandat 232.994 kb on + strandat 233.004 kb on - strandat 233.009 kb on + strandat 233.009 kb on + strandat 233.009 kb on + strandat 233.010 kb on - strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.024 kb on + strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.025 kb on - strandat 233.058 kb on + strandat 233.058 kb on + strandat 233.058 kb on + strandat 233.084 kb on - strandat 233.166 kb on - strandat 233.321 kb on + strand, within GFF214at 233.321 kb on + strand, within GFF214at 233.321 kb on + strand, within GFF214at 233.321 kb on + strand, within GFF214at 233.321 kb on + strand, within GFF214at 233.322 kb on - strand, within GFF214at 233.322 kb on - strand, within GFF214at 233.322 kb on - strand, within GFF214at 233.322 kb on - strand, within GFF214at 233.627 kb on + strand, within GFF214at 233.744 kb on + strand, within GFF214at 233.744 kb on + strand, within GFF214at 233.744 kb on + strand, within GFF214at 233.745 kb on - strand, within GFF214at 233.745 kb on - strand, within GFF214at 233.747 kb on + strand, within GFF214at 233.747 kb on + strand, within GFF214at 233.747 kb on + strand, within GFF214at 233.748 kb on - strand, within GFF214at 234.216 kb on - strand, within GFF214at 234.216 kb on - strand, within GFF214at 234.233 kb on + strand, within GFF214at 234.260 kb on + strand, within GFF214at 234.326 kb on + strand, within GFF214at 234.326 kb on + strand, within GFF214at 234.326 kb on + strand, within GFF214at 234.326 kb on + strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.327 kb on - strand, within GFF214at 234.549 kb on - strand, within GFF214at 235.098 kb on + strandat 235.099 kb on - strandat 235.099 kb on - strandat 235.353 kb on - strandat 235.433 kb on + strandat 235.434 kb on - strandat 235.434 kb on - strandat 235.434 kb on - strandat 235.445 kb on + strandat 235.445 kb on + strandat 235.508 kb on + strand, within GFF215at 235.568 kb on + strand, within GFF215at 235.568 kb on + strand, within GFF215at 235.569 kb on - strand, within GFF215at 235.569 kb on - strand, within GFF215at 235.668 kb on - strand, within GFF215at 235.727 kb on + strand, within GFF215at 235.727 kb on + strand, within GFF215at 235.727 kb on + strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.728 kb on - strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.916 kb on + strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.917 kb on - strand, within GFF215at 235.940 kb on + strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.941 kb on - strand, within GFF215at 235.946 kb on + strand, within GFF215at 235.946 kb on + strand, within GFF215at 235.946 kb on + strand, within GFF215at 235.946 kb on + strand, within GFF215at 236.037 kb on - strand, within GFF215at 236.037 kb on - strand, within GFF215at 236.037 kb on - strand, within GFF215at 236.117 kb on + strand, within GFF215at 236.118 kb on - strand, within GFF215at 236.118 kb on - strand, within GFF215at 236.276 kb on + strand, within GFF215at 236.276 kb on + strand, within GFF215at 236.277 kb on - strand, within GFF215

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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232,156 + GFF213 0.70 +0.5
232,187 - GFF213 0.73 +0.3
232,252 + GFF213 0.78 -0.6
232,253 - GFF213 0.78 +0.4
232,582 - -1.4
232,588 + -0.2
232,611 + -0.4
232,611 + -0.1
232,611 + -0.3
232,722 + -0.1
232,723 - +0.5
232,723 - +0.3
232,723 - +0.3
232,781 + -0.7
232,781 + -1.9
232,781 + -0.0
232,781 + -0.9
232,782 - +0.6
232,782 - -1.5
232,790 + -0.1
232,790 + -0.5
232,791 - -0.2
232,791 - +0.1
232,791 - -0.4
232,868 + -0.5
232,868 + -0.2
232,868 + +0.5
232,868 + +0.3
232,868 + -1.5
232,869 - +0.1
232,904 + -0.6
232,905 - +0.8
232,994 + -0.2
232,994 + -0.8
233,004 - +0.3
233,009 + -0.9
233,009 + -0.8
233,009 + -0.1
233,010 - -1.4
233,024 + +0.9
233,024 + -0.7
233,024 + +0.4
233,024 + -0.2
233,024 + -1.2
233,024 + +0.5
233,024 + -0.5
233,024 + -0.3
233,024 + -0.3
233,024 + -0.5
233,024 + +0.1
233,025 - +0.3
233,025 - -0.5
233,025 - +1.8
233,025 - +0.0
233,025 - +1.1
233,025 - -0.3
233,025 - -0.1
233,025 - -0.4
233,025 - +0.9
233,058 + +0.6
233,058 + +0.0
233,058 + +1.5
233,084 - -0.5
233,166 - -0.1
233,321 + GFF214 0.11 -0.7
233,321 + GFF214 0.11 -0.3
233,321 + GFF214 0.11 +0.2
233,321 + GFF214 0.11 +0.8
233,321 + GFF214 0.11 -1.9
233,322 - GFF214 0.11 -0.0
233,322 - GFF214 0.11 -0.3
233,322 - GFF214 0.11 +0.5
233,322 - GFF214 0.11 +2.8
233,627 + GFF214 0.25 +1.1
233,744 + GFF214 0.30 +0.1
233,744 + GFF214 0.30 +0.0
233,744 + GFF214 0.30 -0.2
233,745 - GFF214 0.30 +0.0
233,745 - GFF214 0.30 -0.3
233,747 + GFF214 0.30 -0.4
233,747 + GFF214 0.30 +3.3
233,747 + GFF214 0.30 +1.0
233,748 - GFF214 0.30 +0.7
234,216 - GFF214 0.51 +0.1
234,216 - GFF214 0.51 +0.3
234,233 + GFF214 0.52 -1.2
234,260 + GFF214 0.53 +0.3
234,326 + GFF214 0.56 +0.4
234,326 + GFF214 0.56 +0.8
234,326 + GFF214 0.56 -0.7
234,326 + GFF214 0.56 +0.0
234,327 - GFF214 0.57 +0.7
234,327 - GFF214 0.57 +0.6
234,327 - GFF214 0.57 -0.0
234,327 - GFF214 0.57 +0.0
234,327 - GFF214 0.57 +0.6
234,549 - GFF214 0.67 +1.8
235,098 + -0.7
235,099 - -0.6
235,099 - +0.7
235,353 - -0.1
235,433 + -0.1
235,434 - +0.7
235,434 - -1.9
235,434 - +1.0
235,445 + -0.4
235,445 + +0.4
235,508 + GFF215 0.11 -0.9
235,568 + GFF215 0.14 +0.3
235,568 + GFF215 0.14 -0.3
235,569 - GFF215 0.14 -0.2
235,569 - GFF215 0.14 -0.2
235,668 - GFF215 0.19 -0.2
235,727 + GFF215 0.22 +0.2
235,727 + GFF215 0.22 -1.7
235,727 + GFF215 0.22 -1.3
235,728 - GFF215 0.22 +0.1
235,728 - GFF215 0.22 -0.5
235,728 - GFF215 0.22 +0.3
235,728 - GFF215 0.22 +0.5
235,728 - GFF215 0.22 +0.3
235,916 + GFF215 0.32 -0.2
235,916 + GFF215 0.32 +1.7
235,916 + GFF215 0.32 -0.0
235,916 + GFF215 0.32 -0.2
235,917 - GFF215 0.32 -0.7
235,917 - GFF215 0.32 -0.3
235,917 - GFF215 0.32 +0.4
235,917 - GFF215 0.32 -0.0
235,940 + GFF215 0.33 -0.1
235,941 - GFF215 0.33 -0.1
235,941 - GFF215 0.33 -0.7
235,941 - GFF215 0.33 -0.2
235,941 - GFF215 0.33 +1.7
235,941 - GFF215 0.33 -0.5
235,946 + GFF215 0.33 -0.7
235,946 + GFF215 0.33 -0.2
235,946 + GFF215 0.33 -1.1
235,946 + GFF215 0.33 -0.3
236,037 - GFF215 0.38 +0.0
236,037 - GFF215 0.38 +1.0
236,037 - GFF215 0.38 -1.2
236,117 + GFF215 0.42 +0.5
236,118 - GFF215 0.42 +1.3
236,118 - GFF215 0.42 -1.1
236,276 + GFF215 0.50 +1.0
236,276 + GFF215 0.50 -0.2
236,277 - GFF215 0.50 -0.9

Or see this region's nucleotide sequence