Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF203 and GFF204 are separated by 82 nucleotides GFF204 and GFF205 are separated by 25 nucleotides
GFF203 - Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4), at 219,390 to 220,901
GFF203
GFF204 - Transcriptional regulator, LysR family, at 220,984 to 221,928
GFF204
GFF205 - ABC transporter ATP-binding protein, at 221,954 to 223,498
GFF205
Position (kb) 220
221
222 Strain fitness (log2 ratio) -1
0
1 at 220.289 kb on - strand, within GFF203 at 220.876 kb on - strand at 220.902 kb on - strand at 220.926 kb on - strand at 220.926 kb on - strand at 220.926 kb on - strand at 220.926 kb on - strand at 220.938 kb on - strand at 220.938 kb on - strand at 220.938 kb on - strand at 220.938 kb on - strand at 220.938 kb on - strand at 220.938 kb on - strand at 220.938 kb on - strand at 220.973 kb on - strand at 220.983 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.990 kb on + strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 220.991 kb on - strand at 221.092 kb on + strand, within GFF204 at 221.093 kb on - strand, within GFF204 at 221.093 kb on - strand, within GFF204 at 221.093 kb on - strand, within GFF204 at 221.312 kb on - strand, within GFF204 at 221.312 kb on - strand, within GFF204 at 221.818 kb on + strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.819 kb on - strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.821 kb on + strand, within GFF204 at 221.822 kb on - strand, within GFF204 at 221.995 kb on - strand at 222.108 kb on - strand at 222.108 kb on - strand at 222.108 kb on - strand at 222.527 kb on + strand, within GFF205 at 222.527 kb on + strand, within GFF205
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 220,289 - GFF203 0.59 -0.9 220,876 - +0.3 220,902 - +0.3 220,926 - +1.3 220,926 - -0.3 220,926 - +0.3 220,926 - -0.9 220,938 - -0.3 220,938 - +0.3 220,938 - -0.3 220,938 - -0.1 220,938 - +1.0 220,938 - -0.1 220,938 - +0.2 220,973 - -0.4 220,983 + -0.0 220,990 + -0.3 220,990 + +0.8 220,990 + +0.3 220,990 + +0.3 220,990 + +0.3 220,990 + -0.2 220,990 + +0.7 220,990 + +0.5 220,990 + +0.1 220,991 - +0.3 220,991 - -1.2 220,991 - +0.0 220,991 - -0.2 220,991 - -0.2 220,991 - +0.3 220,991 - +0.2 220,991 - -1.0 221,092 + GFF204 0.11 +0.4 221,093 - GFF204 0.12 +0.1 221,093 - GFF204 0.12 -0.5 221,093 - GFF204 0.12 +0.5 221,312 - GFF204 0.35 -1.3 221,312 - GFF204 0.35 +1.6 221,818 + GFF204 0.88 -1.1 221,819 - GFF204 0.88 -1.6 221,819 - GFF204 0.88 -0.3 221,819 - GFF204 0.88 -0.7 221,819 - GFF204 0.88 -0.9 221,819 - GFF204 0.88 +1.3 221,819 - GFF204 0.88 -0.0 221,819 - GFF204 0.88 -0.3 221,821 + GFF204 0.89 -0.8 221,821 + GFF204 0.89 -0.4 221,821 + GFF204 0.89 -0.7 221,821 + GFF204 0.89 -1.4 221,822 - GFF204 0.89 +0.5 221,995 - -0.9 222,108 - -0.1 222,108 - -1.7 222,108 - +0.3 222,527 + GFF205 0.37 +0.5 222,527 + GFF205 0.37 +0.2
Or see this region's nucleotide sequence