Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2034 and GFF2035 are separated by 99 nucleotides GFF2035 and GFF2036 are separated by 146 nucleotides
GFF2034 - Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2), at 914,298 to 915,392
GFF2034
GFF2035 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 915,492 to 916,661
GFF2035
GFF2036 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 916,808 to 918,247
GFF2036
Position (kb) 915
916
917 Strain fitness (log2 ratio) -2
-1
0
1
2 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.716 kb on + strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 914.717 kb on - strand, within GFF2034 at 915.130 kb on + strand, within GFF2034 at 915.130 kb on + strand, within GFF2034 at 915.163 kb on + strand, within GFF2034 at 915.163 kb on + strand, within GFF2034 at 915.468 kb on - strand at 915.493 kb on + strand at 915.493 kb on + strand at 915.493 kb on + strand at 915.493 kb on + strand at 915.493 kb on + strand at 915.493 kb on + strand at 915.493 kb on + strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.494 kb on - strand at 915.517 kb on + strand at 915.517 kb on + strand at 915.517 kb on + strand at 915.518 kb on - strand at 915.518 kb on - strand at 915.518 kb on - strand at 915.518 kb on - strand at 915.518 kb on - strand at 915.518 kb on - strand at 915.518 kb on - strand at 915.518 kb on - strand at 915.664 kb on + strand, within GFF2035 at 915.665 kb on - strand, within GFF2035 at 915.665 kb on - strand, within GFF2035 at 915.665 kb on - strand, within GFF2035 at 915.665 kb on - strand, within GFF2035 at 915.665 kb on - strand, within GFF2035 at 915.709 kb on + strand, within GFF2035 at 915.709 kb on + strand, within GFF2035 at 915.709 kb on + strand, within GFF2035 at 915.710 kb on - strand, within GFF2035 at 915.710 kb on - strand, within GFF2035 at 915.710 kb on - strand, within GFF2035 at 915.778 kb on - strand, within GFF2035 at 916.003 kb on + strand, within GFF2035 at 916.003 kb on + strand, within GFF2035 at 916.004 kb on - strand, within GFF2035 at 916.021 kb on + strand, within GFF2035 at 916.021 kb on + strand, within GFF2035 at 916.021 kb on + strand, within GFF2035 at 916.021 kb on + strand, within GFF2035 at 916.022 kb on - strand, within GFF2035 at 916.022 kb on - strand, within GFF2035 at 916.022 kb on - strand, within GFF2035 at 916.022 kb on - strand, within GFF2035 at 916.022 kb on - strand, within GFF2035 at 916.022 kb on - strand, within GFF2035 at 916.063 kb on + strand, within GFF2035 at 916.063 kb on + strand, within GFF2035 at 916.063 kb on + strand, within GFF2035 at 916.064 kb on - strand, within GFF2035 at 916.095 kb on + strand, within GFF2035 at 916.096 kb on + strand, within GFF2035 at 916.097 kb on - strand, within GFF2035 at 916.097 kb on - strand, within GFF2035 at 916.276 kb on + strand, within GFF2035 at 916.276 kb on + strand, within GFF2035 at 916.276 kb on + strand, within GFF2035 at 916.276 kb on + strand, within GFF2035 at 916.277 kb on - strand, within GFF2035 at 916.277 kb on - strand, within GFF2035 at 916.277 kb on - strand, within GFF2035 at 916.309 kb on + strand, within GFF2035 at 916.310 kb on - strand, within GFF2035 at 916.310 kb on - strand, within GFF2035 at 916.310 kb on - strand, within GFF2035 at 916.366 kb on + strand, within GFF2035 at 916.366 kb on + strand, within GFF2035 at 916.366 kb on + strand, within GFF2035 at 916.367 kb on - strand, within GFF2035 at 916.367 kb on - strand, within GFF2035 at 916.367 kb on - strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.426 kb on + strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.427 kb on - strand, within GFF2035 at 916.444 kb on + strand, within GFF2035 at 916.445 kb on - strand, within GFF2035 at 916.445 kb on - strand, within GFF2035 at 916.445 kb on - strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.483 kb on + strand, within GFF2035 at 916.484 kb on - strand, within GFF2035 at 916.484 kb on - strand, within GFF2035 at 916.484 kb on - strand, within GFF2035 at 916.484 kb on - strand, within GFF2035 at 916.484 kb on - strand, within GFF2035 at 916.498 kb on + strand, within GFF2035 at 916.498 kb on + strand, within GFF2035 at 916.498 kb on + strand, within GFF2035 at 916.498 kb on + strand, within GFF2035 at 916.498 kb on + strand, within GFF2035 at 916.498 kb on + strand, within GFF2035 at 916.684 kb on + strand at 916.684 kb on + strand at 916.684 kb on + strand at 916.684 kb on + strand at 916.684 kb on + strand at 916.684 kb on + strand at 916.685 kb on - strand at 916.685 kb on - strand at 916.685 kb on - strand at 916.685 kb on - strand at 916.685 kb on - strand at 916.734 kb on + strand at 916.734 kb on + strand at 916.734 kb on + strand at 916.734 kb on + strand at 916.734 kb on + strand at 916.734 kb on + strand at 916.734 kb on + strand at 916.735 kb on - strand at 916.735 kb on - strand at 916.735 kb on - strand at 916.735 kb on - strand at 916.735 kb on - strand at 916.740 kb on + strand at 916.740 kb on + strand at 916.740 kb on + strand at 916.740 kb on + strand at 916.741 kb on - strand at 916.741 kb on - strand at 916.741 kb on - strand at 916.741 kb on - strand at 916.790 kb on - strand at 916.790 kb on - strand at 916.805 kb on + strand at 916.805 kb on + strand at 916.805 kb on + strand at 916.805 kb on + strand at 916.806 kb on - strand at 916.806 kb on - strand at 916.806 kb on - strand at 916.806 kb on - strand at 916.806 kb on - strand at 916.806 kb on - strand at 917.124 kb on + strand, within GFF2036 at 917.124 kb on + strand, within GFF2036 at 917.125 kb on - strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.223 kb on + strand, within GFF2036 at 917.224 kb on - strand, within GFF2036 at 917.224 kb on - strand, within GFF2036 at 917.224 kb on - strand, within GFF2036 at 917.230 kb on - strand, within GFF2036 at 917.230 kb on - strand, within GFF2036 at 917.230 kb on - strand, within GFF2036 at 917.230 kb on - strand, within GFF2036 at 917.310 kb on + strand, within GFF2036 at 917.310 kb on + strand, within GFF2036 at 917.310 kb on + strand, within GFF2036 at 917.310 kb on + strand, within GFF2036 at 917.311 kb on - strand, within GFF2036 at 917.311 kb on - strand, within GFF2036 at 917.311 kb on - strand, within GFF2036 at 917.311 kb on - strand, within GFF2036 at 917.370 kb on + strand, within GFF2036 at 917.371 kb on - strand, within GFF2036 at 917.469 kb on + strand, within GFF2036 at 917.469 kb on + strand, within GFF2036 at 917.469 kb on + strand, within GFF2036 at 917.470 kb on - strand, within GFF2036 at 917.470 kb on - strand, within GFF2036 at 917.470 kb on - strand, within GFF2036
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 914,716 + GFF2034 0.38 -2.3 914,716 + GFF2034 0.38 +0.1 914,716 + GFF2034 0.38 +1.0 914,716 + GFF2034 0.38 +1.3 914,716 + GFF2034 0.38 +0.6 914,716 + GFF2034 0.38 +0.8 914,716 + GFF2034 0.38 +0.9 914,716 + GFF2034 0.38 +0.2 914,716 + GFF2034 0.38 +0.9 914,716 + GFF2034 0.38 +0.3 914,716 + GFF2034 0.38 -1.0 914,716 + GFF2034 0.38 -1.5 914,716 + GFF2034 0.38 -0.3 914,717 - GFF2034 0.38 +0.8 914,717 - GFF2034 0.38 +0.3 914,717 - GFF2034 0.38 -0.3 914,717 - GFF2034 0.38 -1.0 914,717 - GFF2034 0.38 +1.3 914,717 - GFF2034 0.38 +0.3 914,717 - GFF2034 0.38 -1.1 914,717 - GFF2034 0.38 -2.1 915,130 + GFF2034 0.76 -0.7 915,130 + GFF2034 0.76 +1.6 915,163 + GFF2034 0.79 +0.5 915,163 + GFF2034 0.79 +0.4 915,468 - +0.3 915,493 + +0.4 915,493 + +0.7 915,493 + -0.2 915,493 + +0.3 915,493 + +0.3 915,493 + +1.8 915,493 + +0.6 915,494 - +0.8 915,494 - -0.1 915,494 - +0.1 915,494 - +0.0 915,494 - +1.0 915,494 - -0.2 915,494 - -0.4 915,494 - +1.9 915,494 - +0.3 915,494 - -0.3 915,517 + -0.7 915,517 + +0.7 915,517 + -1.0 915,518 - +0.6 915,518 - +0.4 915,518 - -0.5 915,518 - -0.7 915,518 - +1.0 915,518 - +0.4 915,518 - +0.8 915,518 - +0.1 915,664 + GFF2035 0.15 +1.7 915,665 - GFF2035 0.15 +0.6 915,665 - GFF2035 0.15 -0.1 915,665 - GFF2035 0.15 +0.6 915,665 - GFF2035 0.15 +0.6 915,665 - GFF2035 0.15 -0.7 915,709 + GFF2035 0.19 +0.7 915,709 + GFF2035 0.19 -0.0 915,709 + GFF2035 0.19 +1.3 915,710 - GFF2035 0.19 -0.1 915,710 - GFF2035 0.19 -0.4 915,710 - GFF2035 0.19 -1.0 915,778 - GFF2035 0.24 -1.6 916,003 + GFF2035 0.44 -0.7 916,003 + GFF2035 0.44 +0.2 916,004 - GFF2035 0.44 -0.7 916,021 + GFF2035 0.45 +0.5 916,021 + GFF2035 0.45 +0.3 916,021 + GFF2035 0.45 -0.4 916,021 + GFF2035 0.45 +0.7 916,022 - GFF2035 0.45 -2.7 916,022 - GFF2035 0.45 -0.5 916,022 - GFF2035 0.45 +1.4 916,022 - GFF2035 0.45 -0.1 916,022 - GFF2035 0.45 -0.0 916,022 - GFF2035 0.45 +0.3 916,063 + GFF2035 0.49 -0.7 916,063 + GFF2035 0.49 -0.3 916,063 + GFF2035 0.49 -2.1 916,064 - GFF2035 0.49 +0.4 916,095 + GFF2035 0.52 +0.1 916,096 + GFF2035 0.52 -0.8 916,097 - GFF2035 0.52 +0.1 916,097 - GFF2035 0.52 -0.4 916,276 + GFF2035 0.67 -1.0 916,276 + GFF2035 0.67 -0.3 916,276 + GFF2035 0.67 -0.3 916,276 + GFF2035 0.67 +0.4 916,277 - GFF2035 0.67 +0.0 916,277 - GFF2035 0.67 +0.6 916,277 - GFF2035 0.67 -0.6 916,309 + GFF2035 0.70 +0.9 916,310 - GFF2035 0.70 -0.3 916,310 - GFF2035 0.70 +0.7 916,310 - GFF2035 0.70 -0.0 916,366 + GFF2035 0.75 -0.3 916,366 + GFF2035 0.75 +0.4 916,366 + GFF2035 0.75 -0.7 916,367 - GFF2035 0.75 -0.3 916,367 - GFF2035 0.75 +0.3 916,367 - GFF2035 0.75 +0.6 916,426 + GFF2035 0.80 +0.3 916,426 + GFF2035 0.80 +0.3 916,426 + GFF2035 0.80 +0.2 916,426 + GFF2035 0.80 +2.0 916,426 + GFF2035 0.80 -0.3 916,426 + GFF2035 0.80 +0.7 916,426 + GFF2035 0.80 +0.3 916,426 + GFF2035 0.80 +0.4 916,426 + GFF2035 0.80 -0.2 916,426 + GFF2035 0.80 +0.0 916,426 + GFF2035 0.80 -0.1 916,426 + GFF2035 0.80 +0.9 916,427 - GFF2035 0.80 +0.1 916,427 - GFF2035 0.80 -0.4 916,427 - GFF2035 0.80 +0.6 916,427 - GFF2035 0.80 +1.0 916,427 - GFF2035 0.80 +0.6 916,427 - GFF2035 0.80 +0.6 916,427 - GFF2035 0.80 +0.2 916,427 - GFF2035 0.80 +0.7 916,444 + GFF2035 0.81 +0.6 916,445 - GFF2035 0.81 +0.2 916,445 - GFF2035 0.81 +1.3 916,445 - GFF2035 0.81 +0.3 916,483 + GFF2035 0.85 +0.3 916,483 + GFF2035 0.85 +1.5 916,483 + GFF2035 0.85 +0.3 916,483 + GFF2035 0.85 +0.7 916,483 + GFF2035 0.85 -0.0 916,483 + GFF2035 0.85 -0.9 916,483 + GFF2035 0.85 +0.1 916,483 + GFF2035 0.85 +0.0 916,484 - GFF2035 0.85 +0.5 916,484 - GFF2035 0.85 -0.9 916,484 - GFF2035 0.85 -1.0 916,484 - GFF2035 0.85 -0.2 916,484 - GFF2035 0.85 -0.3 916,498 + GFF2035 0.86 +0.7 916,498 + GFF2035 0.86 -0.6 916,498 + GFF2035 0.86 +0.3 916,498 + GFF2035 0.86 -0.4 916,498 + GFF2035 0.86 +0.5 916,498 + GFF2035 0.86 +1.8 916,684 + -1.1 916,684 + +0.4 916,684 + -0.1 916,684 + -2.2 916,684 + +2.0 916,684 + -1.3 916,685 - -1.1 916,685 - -0.3 916,685 - +0.3 916,685 - +0.2 916,685 - +2.0 916,734 + +0.7 916,734 + +0.2 916,734 + +1.3 916,734 + +0.4 916,734 + +0.2 916,734 + -0.0 916,734 + -0.3 916,735 - +0.7 916,735 - +0.6 916,735 - +0.7 916,735 - +0.0 916,735 - -0.2 916,740 + +0.9 916,740 + -1.0 916,740 + -0.7 916,740 + +0.9 916,741 - -0.3 916,741 - -0.4 916,741 - -0.7 916,741 - -0.2 916,790 - +0.2 916,790 - +1.2 916,805 + -0.6 916,805 + -0.3 916,805 + +1.3 916,805 + -0.1 916,806 - -0.5 916,806 - -0.5 916,806 - -0.4 916,806 - -1.2 916,806 - -0.9 916,806 - -0.8 917,124 + GFF2036 0.22 +0.1 917,124 + GFF2036 0.22 -2.0 917,125 - GFF2036 0.22 +0.8 917,223 + GFF2036 0.29 -0.4 917,223 + GFF2036 0.29 -1.3 917,223 + GFF2036 0.29 +0.1 917,223 + GFF2036 0.29 +1.6 917,223 + GFF2036 0.29 +0.5 917,223 + GFF2036 0.29 +0.4 917,223 + GFF2036 0.29 +0.8 917,223 + GFF2036 0.29 -0.2 917,224 - GFF2036 0.29 -0.8 917,224 - GFF2036 0.29 -0.5 917,224 - GFF2036 0.29 -0.7 917,230 - GFF2036 0.29 -0.6 917,230 - GFF2036 0.29 +0.0 917,230 - GFF2036 0.29 -1.7 917,230 - GFF2036 0.29 +1.0 917,310 + GFF2036 0.35 -0.4 917,310 + GFF2036 0.35 +0.6 917,310 + GFF2036 0.35 -0.2 917,310 + GFF2036 0.35 -0.2 917,311 - GFF2036 0.35 +0.2 917,311 - GFF2036 0.35 +0.4 917,311 - GFF2036 0.35 +0.1 917,311 - GFF2036 0.35 -0.2 917,370 + GFF2036 0.39 +0.1 917,371 - GFF2036 0.39 -0.0 917,469 + GFF2036 0.46 +1.9 917,469 + GFF2036 0.46 -0.7 917,469 + GFF2036 0.46 +0.3 917,470 - GFF2036 0.46 -0.7 917,470 - GFF2036 0.46 +0.3 917,470 - GFF2036 0.46 +1.3
Or see this region's nucleotide sequence