Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2001

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2000 and GFF2001 are separated by 3 nucleotidesGFF2001 and GFF2002 are separated by 103 nucleotidesGFF2002 and GFF2003 are separated by 12 nucleotidesGFF2003 and GFF2004 are separated by 74 nucleotides GFF2000 - Uracil permease, at 876,816 to 878,117 GFF2000 GFF2001 - hypothetical protein, at 878,121 to 879,380 GFF2001 GFF2002 - uncharacterized domain 1, at 879,484 to 879,906 GFF2002 GFF2003 - hypothetical protein, at 879,919 to 880,296 GFF2003 GFF2004 - hypothetical protein, at 880,371 to 880,721 GFF2004 Position (kb) 878 879 880Strain fitness (log2 ratio) -2 -1 0 1 2at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.179 kb on + strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.180 kb on - strand, within GFF2000at 877.440 kb on + strand, within GFF2000at 877.441 kb on - strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.653 kb on + strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.654 kb on - strand, within GFF2000at 877.731 kb on + strand, within GFF2000at 877.731 kb on + strand, within GFF2000at 877.731 kb on + strand, within GFF2000at 877.732 kb on - strand, within GFF2000at 877.732 kb on - strand, within GFF2000at 877.732 kb on - strand, within GFF2000at 877.764 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.770 kb on + strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 877.771 kb on - strand, within GFF2000at 878.007 kb on + strandat 878.008 kb on - strandat 878.076 kb on + strandat 878.077 kb on - strandat 878.354 kb on - strand, within GFF2001at 878.380 kb on + strand, within GFF2001at 878.380 kb on + strand, within GFF2001at 878.380 kb on + strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.381 kb on - strand, within GFF2001at 878.929 kb on + strand, within GFF2001at 878.929 kb on + strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.930 kb on - strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.959 kb on + strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 878.960 kb on - strand, within GFF2001at 879.432 kb on + strandat 879.432 kb on + strandat 879.433 kb on - strandat 879.433 kb on - strandat 879.433 kb on - strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.452 kb on + strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.453 kb on - strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.454 kb on + strandat 879.455 kb on - strandat 879.455 kb on - strandat 879.455 kb on - strandat 879.469 kb on + strandat 879.634 kb on + strand, within GFF2002at 879.635 kb on - strand, within GFF2002at 879.635 kb on - strand, within GFF2002at 879.635 kb on - strand, within GFF2002at 879.701 kb on - strand, within GFF2002at 879.701 kb on - strand, within GFF2002at 879.701 kb on - strand, within GFF2002at 879.904 kb on + strandat 879.905 kb on - strandat 879.920 kb on + strandat 879.989 kb on + strand, within GFF2003at 879.989 kb on + strand, within GFF2003at 879.989 kb on + strand, within GFF2003at 879.990 kb on - strand, within GFF2003at 879.990 kb on - strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.085 kb on + strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.086 kb on - strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.151 kb on + strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.152 kb on - strand, within GFF2003at 880.328 kb on + strandat 880.328 kb on + strandat 880.329 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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877,179 + GFF2000 0.28 +1.3
877,179 + GFF2000 0.28 -0.8
877,179 + GFF2000 0.28 +0.5
877,179 + GFF2000 0.28 +0.7
877,180 - GFF2000 0.28 +1.0
877,180 - GFF2000 0.28 -0.1
877,180 - GFF2000 0.28 +0.1
877,180 - GFF2000 0.28 -0.5
877,440 + GFF2000 0.48 +0.1
877,441 - GFF2000 0.48 -0.3
877,653 + GFF2000 0.64 +0.2
877,653 + GFF2000 0.64 -0.4
877,653 + GFF2000 0.64 +0.5
877,653 + GFF2000 0.64 +0.1
877,653 + GFF2000 0.64 -0.7
877,653 + GFF2000 0.64 -1.3
877,654 - GFF2000 0.64 +0.7
877,654 - GFF2000 0.64 +1.3
877,654 - GFF2000 0.64 -0.3
877,654 - GFF2000 0.64 +1.7
877,654 - GFF2000 0.64 +0.5
877,654 - GFF2000 0.64 -0.2
877,654 - GFF2000 0.64 -2.5
877,654 - GFF2000 0.64 +0.5
877,654 - GFF2000 0.64 +0.2
877,731 + GFF2000 0.70 +0.7
877,731 + GFF2000 0.70 -0.7
877,731 + GFF2000 0.70 -0.3
877,732 - GFF2000 0.70 +0.3
877,732 - GFF2000 0.70 +0.9
877,732 - GFF2000 0.70 -0.3
877,764 + GFF2000 0.73 -0.7
877,770 + GFF2000 0.73 +1.1
877,770 + GFF2000 0.73 -0.3
877,770 + GFF2000 0.73 +0.0
877,770 + GFF2000 0.73 +0.9
877,771 - GFF2000 0.73 +1.9
877,771 - GFF2000 0.73 -0.3
877,771 - GFF2000 0.73 +1.2
877,771 - GFF2000 0.73 -1.3
878,007 + -0.4
878,008 - +0.5
878,076 + -0.1
878,077 - -0.0
878,354 - GFF2001 0.18 +0.5
878,380 + GFF2001 0.21 +0.0
878,380 + GFF2001 0.21 -0.1
878,380 + GFF2001 0.21 -1.0
878,381 - GFF2001 0.21 +0.3
878,381 - GFF2001 0.21 +0.8
878,381 - GFF2001 0.21 +0.4
878,381 - GFF2001 0.21 +0.3
878,381 - GFF2001 0.21 +0.6
878,381 - GFF2001 0.21 +0.7
878,381 - GFF2001 0.21 +0.3
878,381 - GFF2001 0.21 +1.9
878,381 - GFF2001 0.21 -1.2
878,929 + GFF2001 0.64 -1.8
878,929 + GFF2001 0.64 +0.1
878,930 - GFF2001 0.64 +0.5
878,930 - GFF2001 0.64 +0.2
878,930 - GFF2001 0.64 +0.7
878,959 + GFF2001 0.67 -1.1
878,959 + GFF2001 0.67 +1.0
878,959 + GFF2001 0.67 -0.1
878,960 - GFF2001 0.67 -0.3
878,960 - GFF2001 0.67 -1.2
878,960 - GFF2001 0.67 -0.4
879,432 + +0.6
879,432 + +0.2
879,433 - -0.5
879,433 - -0.1
879,433 - +0.4
879,452 + +0.1
879,452 + -0.5
879,452 + -0.3
879,452 + +0.8
879,452 + +0.3
879,453 - +0.7
879,453 - -0.1
879,453 - +0.0
879,453 - +0.2
879,453 - -1.3
879,453 - +0.0
879,453 - +0.3
879,453 - -0.3
879,453 - +0.0
879,453 - -1.7
879,454 + -0.3
879,454 + -1.5
879,454 + -0.0
879,454 + -1.4
879,454 + -0.1
879,454 + +0.8
879,454 + -2.1
879,454 + -0.4
879,455 - -0.2
879,455 - -0.3
879,455 - -0.3
879,469 + +0.3
879,634 + GFF2002 0.35 +0.1
879,635 - GFF2002 0.36 -0.0
879,635 - GFF2002 0.36 -0.1
879,635 - GFF2002 0.36 +0.2
879,701 - GFF2002 0.51 -0.8
879,701 - GFF2002 0.51 -0.3
879,701 - GFF2002 0.51 -0.2
879,904 + -0.1
879,905 - -0.4
879,920 + +0.5
879,989 + GFF2003 0.19 -0.1
879,989 + GFF2003 0.19 -2.0
879,989 + GFF2003 0.19 -0.4
879,990 - GFF2003 0.19 +1.3
879,990 - GFF2003 0.19 +0.0
880,085 + GFF2003 0.44 -0.3
880,085 + GFF2003 0.44 -0.7
880,085 + GFF2003 0.44 -0.1
880,085 + GFF2003 0.44 +0.5
880,086 - GFF2003 0.44 +1.5
880,086 - GFF2003 0.44 +0.7
880,086 - GFF2003 0.44 +0.9
880,086 - GFF2003 0.44 +0.3
880,086 - GFF2003 0.44 +0.1
880,086 - GFF2003 0.44 -0.6
880,151 + GFF2003 0.61 +0.0
880,151 + GFF2003 0.61 +2.0
880,151 + GFF2003 0.61 +1.3
880,151 + GFF2003 0.61 -1.1
880,151 + GFF2003 0.61 +0.2
880,152 - GFF2003 0.62 +0.0
880,152 - GFF2003 0.62 +0.0
880,152 - GFF2003 0.62 +0.2
880,152 - GFF2003 0.62 -0.5
880,328 + +0.2
880,328 + +1.3
880,329 - +0.3

Or see this region's nucleotide sequence