Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1977

Experiment: Ying_OrganicAcid7 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1976 and GFF1977 are separated by 4 nucleotidesGFF1977 and GFF1978 are separated by 37 nucleotides GFF1976 - Transcriptional regulator, at 851,219 to 852,163 GFF1976 GFF1977 - peptidase M14, carboxypeptidase A, at 852,168 to 853,046 GFF1977 GFF1978 - BEC protein, at 853,084 to 854,340 GFF1978 Position (kb) 852 853 854Strain fitness (log2 ratio) -2 -1 0 1 2at 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.196 kb on + strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.197 kb on - strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.202 kb on + strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.203 kb on - strandat 851.678 kb on + strand, within GFF1976at 851.679 kb on - strand, within GFF1976at 851.844 kb on - strand, within GFF1976at 852.352 kb on + strand, within GFF1977at 852.353 kb on - strand, within GFF1977at 852.394 kb on + strand, within GFF1977at 852.394 kb on + strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.395 kb on - strand, within GFF1977at 852.586 kb on + strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.587 kb on - strand, within GFF1977at 852.850 kb on + strand, within GFF1977at 853.057 kb on + strandat 853.058 kb on - strandat 853.058 kb on - strandat 853.058 kb on - strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.109 kb on + strandat 853.110 kb on - strandat 853.110 kb on - strandat 853.110 kb on - strandat 853.191 kb on - strandat 853.286 kb on + strand, within GFF1978at 853.286 kb on + strand, within GFF1978at 853.287 kb on - strand, within GFF1978at 853.287 kb on - strand, within GFF1978at 853.287 kb on - strand, within GFF1978at 853.298 kb on + strand, within GFF1978at 853.298 kb on + strand, within GFF1978at 853.299 kb on - strand, within GFF1978at 853.299 kb on - strand, within GFF1978at 853.422 kb on - strand, within GFF1978at 853.469 kb on + strand, within GFF1978at 853.469 kb on + strand, within GFF1978at 853.470 kb on - strand, within GFF1978at 853.470 kb on - strand, within GFF1978at 853.470 kb on - strand, within GFF1978at 853.488 kb on - strand, within GFF1978at 853.511 kb on + strand, within GFF1978at 853.512 kb on - strand, within GFF1978at 853.516 kb on - strand, within GFF1978at 853.565 kb on + strand, within GFF1978at 853.565 kb on + strand, within GFF1978at 853.566 kb on - strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.709 kb on + strand, within GFF1978at 853.710 kb on - strand, within GFF1978at 853.710 kb on - strand, within GFF1978at 853.710 kb on - strand, within GFF1978at 853.769 kb on + strand, within GFF1978at 853.770 kb on - strand, within GFF1978at 853.770 kb on - strand, within GFF1978at 853.772 kb on + strand, within GFF1978at 853.773 kb on - strand, within GFF1978at 853.907 kb on + strand, within GFF1978at 853.907 kb on + strand, within GFF1978

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3
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851,196 + +1.1
851,196 + -0.7
851,196 + -0.2
851,196 + -0.4
851,196 + -0.8
851,197 - +0.1
851,197 - +1.0
851,197 - +1.0
851,197 - +0.5
851,197 - -1.2
851,197 - -0.4
851,197 - -0.8
851,197 - +0.6
851,197 - +0.3
851,202 + +0.1
851,202 + +1.3
851,202 + -0.4
851,202 + +1.5
851,202 + -0.2
851,203 - -0.8
851,203 - -0.0
851,203 - +0.1
851,203 - -1.1
851,678 + GFF1976 0.49 -0.2
851,679 - GFF1976 0.49 +0.1
851,844 - GFF1976 0.66 -1.1
852,352 + GFF1977 0.21 -1.1
852,353 - GFF1977 0.21 +0.6
852,394 + GFF1977 0.26 +0.1
852,394 + GFF1977 0.26 -1.0
852,395 - GFF1977 0.26 -0.3
852,395 - GFF1977 0.26 -0.5
852,395 - GFF1977 0.26 -0.3
852,586 + GFF1977 0.48 +0.1
852,587 - GFF1977 0.48 -1.0
852,587 - GFF1977 0.48 +0.1
852,587 - GFF1977 0.48 +0.9
852,587 - GFF1977 0.48 -0.8
852,850 + GFF1977 0.78 -0.8
853,057 + -0.7
853,058 - -0.0
853,058 - -0.8
853,058 - -1.1
853,109 + +1.8
853,109 + +0.8
853,109 + +0.3
853,109 + -1.1
853,109 + -1.1
853,110 - -0.1
853,110 - -0.5
853,110 - +0.7
853,191 - -0.7
853,286 + GFF1978 0.16 +0.1
853,286 + GFF1978 0.16 +0.0
853,287 - GFF1978 0.16 +0.3
853,287 - GFF1978 0.16 -0.0
853,287 - GFF1978 0.16 +2.3
853,298 + GFF1978 0.17 +0.7
853,298 + GFF1978 0.17 -0.3
853,299 - GFF1978 0.17 +0.3
853,299 - GFF1978 0.17 -0.8
853,422 - GFF1978 0.27 -0.8
853,469 + GFF1978 0.31 -1.0
853,469 + GFF1978 0.31 +1.3
853,470 - GFF1978 0.31 +1.0
853,470 - GFF1978 0.31 -0.6
853,470 - GFF1978 0.31 +0.9
853,488 - GFF1978 0.32 -0.2
853,511 + GFF1978 0.34 -0.4
853,512 - GFF1978 0.34 -0.5
853,516 - GFF1978 0.34 +0.3
853,565 + GFF1978 0.38 -1.8
853,565 + GFF1978 0.38 +1.3
853,566 - GFF1978 0.38 -0.2
853,709 + GFF1978 0.50 -0.5
853,709 + GFF1978 0.50 +0.2
853,709 + GFF1978 0.50 -0.2
853,709 + GFF1978 0.50 -0.3
853,709 + GFF1978 0.50 +0.0
853,710 - GFF1978 0.50 -0.1
853,710 - GFF1978 0.50 +0.0
853,710 - GFF1978 0.50 +1.3
853,769 + GFF1978 0.54 -0.7
853,770 - GFF1978 0.55 -0.1
853,770 - GFF1978 0.55 +0.3
853,772 + GFF1978 0.55 -0.0
853,773 - GFF1978 0.55 +0.2
853,907 + GFF1978 0.65 +1.3
853,907 + GFF1978 0.65 -0.1

Or see this region's nucleotide sequence