Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1937 and GFF1938 are separated by 25 nucleotides GFF1938 and GFF1939 are separated by 86 nucleotides GFF1939 and GFF1940 are separated by 19 nucleotides
GFF1937 - Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-), at 811,730 to 812,770
GFF1937
GFF1938 - Transcriptional regulator, LysR family, at 812,796 to 813,701
GFF1938
GFF1939 - Pirin, at 813,788 to 814,663
GFF1939
GFF1940 - Pirin-related protein, at 814,683 to 815,552
GFF1940
Position (kb) 812
813
814 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 811.912 kb on - strand, within GFF1937 at 811.912 kb on - strand, within GFF1937 at 811.959 kb on + strand, within GFF1937 at 811.959 kb on + strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 811.960 kb on - strand, within GFF1937 at 812.037 kb on + strand, within GFF1937 at 812.037 kb on + strand, within GFF1937 at 812.340 kb on + strand, within GFF1937 at 812.770 kb on + strand at 812.785 kb on + strand at 812.785 kb on + strand at 812.968 kb on + strand, within GFF1938 at 812.968 kb on + strand, within GFF1938 at 812.969 kb on - strand, within GFF1938 at 813.179 kb on - strand, within GFF1938 at 813.179 kb on - strand, within GFF1938 at 813.496 kb on + strand, within GFF1938 at 813.497 kb on - strand, within GFF1938 at 813.608 kb on + strand, within GFF1938 at 813.869 kb on + strand at 813.870 kb on - strand at 813.870 kb on - strand at 813.915 kb on - strand, within GFF1939 at 813.934 kb on - strand, within GFF1939 at 814.109 kb on + strand, within GFF1939 at 814.110 kb on - strand, within GFF1939 at 814.565 kb on + strand, within GFF1939
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 811,912 - GFF1937 0.17 -0.8 811,912 - GFF1937 0.17 +0.8 811,959 + GFF1937 0.22 -0.3 811,959 + GFF1937 0.22 -0.0 811,960 - GFF1937 0.22 +0.0 811,960 - GFF1937 0.22 +7.1 811,960 - GFF1937 0.22 +0.0 811,960 - GFF1937 0.22 -0.7 812,037 + GFF1937 0.29 +0.6 812,037 + GFF1937 0.29 +0.0 812,340 + GFF1937 0.59 -0.1 812,770 + +1.4 812,785 + +0.5 812,785 + -0.8 812,968 + GFF1938 0.19 +0.5 812,968 + GFF1938 0.19 -0.0 812,969 - GFF1938 0.19 -0.4 813,179 - GFF1938 0.42 +0.4 813,179 - GFF1938 0.42 +1.5 813,496 + GFF1938 0.77 +0.5 813,497 - GFF1938 0.77 +0.9 813,608 + GFF1938 0.90 +0.0 813,869 + -0.4 813,870 - -1.3 813,870 - +0.5 813,915 - GFF1939 0.14 -0.5 813,934 - GFF1939 0.17 -0.1 814,109 + GFF1939 0.37 +0.1 814,110 - GFF1939 0.37 -0.5 814,565 + GFF1939 0.89 -1.5
Or see this region's nucleotide sequence