Experiment: Ying_OrganicAcid7 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1866 and GFF1867 overlap by 4 nucleotides GFF1867 and GFF1868 are separated by 87 nucleotides GFF1868 and GFF1869 are separated by 3 nucleotides
GFF1866 - periplasmic sensor signal transduction histidine kinase, at 730,252 to 731,505
GFF1866
GFF1867 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 731,502 to 732,221
GFF1867
GFF1868 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 732,309 to 733,838
GFF1868
GFF1869 - AmpG permease, at 733,842 to 735,257
GFF1869
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.477 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.527 kb on + strand at 731.725 kb on + strand, within GFF1867 at 731.725 kb on + strand, within GFF1867 at 731.726 kb on - strand, within GFF1867 at 731.914 kb on + strand, within GFF1867 at 731.914 kb on + strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 731.915 kb on - strand, within GFF1867 at 732.160 kb on + strand at 732.160 kb on + strand at 732.160 kb on + strand at 732.160 kb on + strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.161 kb on - strand at 732.234 kb on - strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.296 kb on + strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.297 kb on - strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.306 kb on + strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.307 kb on - strand at 732.822 kb on + strand, within GFF1868 at 732.822 kb on + strand, within GFF1868 at 732.822 kb on + strand, within GFF1868 at 732.822 kb on + strand, within GFF1868 at 732.823 kb on - strand, within GFF1868 at 733.239 kb on + strand, within GFF1868 at 733.239 kb on + strand, within GFF1868 at 733.240 kb on - strand, within GFF1868 at 733.240 kb on - strand, within GFF1868 at 733.240 kb on - strand, within GFF1868 at 733.506 kb on + strand, within GFF1868 at 733.506 kb on + strand, within GFF1868 at 733.506 kb on + strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.507 kb on - strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.560 kb on + strand, within GFF1868 at 733.561 kb on - strand, within GFF1868 at 733.561 kb on - strand, within GFF1868 at 733.561 kb on - strand, within GFF1868 at 733.740 kb on + strand at 733.741 kb on - strand at 733.945 kb on + strand at 733.945 kb on + strand at 734.317 kb on + strand, within GFF1869 at 734.332 kb on + strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.333 kb on - strand, within GFF1869 at 734.570 kb on - strand, within GFF1869 at 734.596 kb on + strand, within GFF1869 at 734.707 kb on + strand, within GFF1869 at 734.707 kb on + strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.708 kb on - strand, within GFF1869 at 734.708 kb on - strand, within GFF1869
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep A; time point 3 remove 731,477 + -1.9 731,527 + -0.2 731,527 + +1.9 731,527 + +0.4 731,527 + +0.1 731,527 + -0.5 731,527 + +1.4 731,527 + -1.3 731,725 + GFF1867 0.31 -0.3 731,725 + GFF1867 0.31 -0.2 731,726 - GFF1867 0.31 +0.0 731,914 + GFF1867 0.57 +1.8 731,914 + GFF1867 0.57 -0.4 731,915 - GFF1867 0.57 +0.2 731,915 - GFF1867 0.57 -0.1 731,915 - GFF1867 0.57 +0.1 732,160 + +0.4 732,160 + +0.4 732,160 + -1.8 732,160 + +0.4 732,161 - -1.2 732,161 - -0.1 732,161 - +0.9 732,161 - +0.4 732,161 - -1.1 732,161 - -2.2 732,161 - -0.2 732,234 - -0.8 732,296 + +0.0 732,296 + +0.4 732,296 + -0.8 732,296 + -0.6 732,297 - -0.8 732,297 - -0.4 732,297 - +0.4 732,297 - -0.4 732,297 - +0.0 732,306 + +0.4 732,306 + -0.2 732,306 + +0.7 732,306 + -0.4 732,306 + -0.1 732,306 + +0.2 732,307 - +1.2 732,307 - +0.4 732,307 - +1.4 732,307 - -0.6 732,822 + GFF1868 0.34 -0.2 732,822 + GFF1868 0.34 +0.0 732,822 + GFF1868 0.34 -0.2 732,822 + GFF1868 0.34 +0.5 732,823 - GFF1868 0.34 +1.1 733,239 + GFF1868 0.61 -0.6 733,239 + GFF1868 0.61 -1.3 733,240 - GFF1868 0.61 -0.3 733,240 - GFF1868 0.61 -0.1 733,240 - GFF1868 0.61 +0.2 733,506 + GFF1868 0.78 +0.1 733,506 + GFF1868 0.78 +0.1 733,506 + GFF1868 0.78 +0.3 733,507 - GFF1868 0.78 -0.5 733,507 - GFF1868 0.78 +0.3 733,507 - GFF1868 0.78 +1.2 733,507 - GFF1868 0.78 +0.5 733,560 + GFF1868 0.82 +0.1 733,560 + GFF1868 0.82 -1.3 733,560 + GFF1868 0.82 -0.6 733,560 + GFF1868 0.82 +0.2 733,561 - GFF1868 0.82 +0.3 733,561 - GFF1868 0.82 +0.9 733,561 - GFF1868 0.82 -1.2 733,740 + +0.4 733,741 - +1.0 733,945 + -0.3 733,945 + +0.6 734,317 + GFF1869 0.34 +0.6 734,332 + GFF1869 0.35 +0.4 734,333 - GFF1869 0.35 -0.1 734,333 - GFF1869 0.35 +1.9 734,333 - GFF1869 0.35 +1.4 734,333 - GFF1869 0.35 -1.0 734,570 - GFF1869 0.51 -1.3 734,596 + GFF1869 0.53 -0.9 734,707 + GFF1869 0.61 +1.2 734,707 + GFF1869 0.61 -1.2 734,708 - GFF1869 0.61 -1.2 734,708 - GFF1869 0.61 -0.6 734,708 - GFF1869 0.61 -0.9
Or see this region's nucleotide sequence